Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480455.1

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Reverse (-)

1109 .. 2196

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaaatttgcacgacccattttggatatcaggcctgtagctggcttgttgaaaaaattcattgacattggtccccataggataaccagaggctattggttaagaaaatcagcattagcttgtttgcattccggaaacaagaaagtggctctgaggcatgcaagggagttgaagttggcgaatgagagtagagaaaaatgtgcaaacttcttgaacagagtgatggaagtgcttgattttatcgcaaatgctgaattgacaaagaaggtttctgaagccatccaaattggagctaaagctataaaggaaaataggattagtatggaagaagtcgaagatagcctacaagaaattgaggagagcattgatacattaaagcaattagaaaatgttatagaatcaacccccctgtactcagttacggatgatgaagaaaatatcgaagaggagttcaagaaactagaactggatattggacttgaaaacgatcacaaaccaatccaggaaaccgagattaataatgcagtagaaacagacatttcagaatctgctgaagcgttgatagattctttatcaaatctcaagctcgtggatggtggtcaagcaaggataccagcagttcacagcactgcctcgacagcaagaaacaacaaaacaaaaggtcctgagcttgcaactgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

227

Amino Acids

25.34

Weight (kDa)

5.23

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	5, 56
AcuI	CTGAAG	2 cut(s)	294, 573
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	52, 172, 214, 454, 482
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	6 cut(s)	41, 119, 293, 299, 586, 670
AluI	AGCT	6 cut(s)	41, 119, 293, 299, 586, 670
AlwNI	CAGNNNCTG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	5, 56
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	71, 662
AvaII	GGWCC	2 cut(s)	71, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BauI	CACGAG	1 cut(s)	587
BccI	CCATC	3 cut(s)	217, 287, 587
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	2 cut(s)	71, 662
BmgT120I	GGNCC	2 cut(s)	71, 662
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	503
BoxI	GACNNNNGTC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	503
BseGI	GGATG	3 cut(s)	279, 430, 598
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	143, 429, 657
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	371, 461
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	487
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	3 cut(s)	144, 428, 658
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	471
BssMI	GATC	1 cut(s)	487
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	43, 159, 672
BstDEI	CTNAG	3 cut(s)	152, 415, 666
BstF5I	GGATG	3 cut(s)	279, 430, 598
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	161
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	279, 430, 598
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	3 cut(s)	43, 159, 672
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	71, 662
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	158
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	152, 415, 666
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	71, 662
Eco57I	CTGAAG	2 cut(s)	294, 573
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	1 cut(s)	161
FaiI	YATR	5 cut(s)	78, 159, 302, 323, 395
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	157
FokI	GGATG	3 cut(s)	266, 437, 605
FspBI	CTAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	3 cut(s)	398, 545, 566
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	3 cut(s)	153, 274, 544
Hpy188III	TCNNGA	4 cut(s)	132, 211, 454, 665
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	259
HpyCH4V	TGCA	6 cut(s)	11, 127, 161, 203, 524, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	3 cut(s)	152, 415, 666
Hsp92II	CATG	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	4 cut(s)	338, 347, 443, 455
MluCI	AATT	6 cut(s)	5, 56, 254, 285, 351, 380
MnlI	CCTC	5 cut(s)	83, 147, 349, 439, 643
MroI	TCCGGA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	3 cut(s)	101, 374, 516
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	398, 545, 566
PfoI	TCCNGGA	1 cut(s)	501
PpuMI	RGGWCCY	1 cut(s)	662
PshAI	GACNNNNGTC	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	71, 662
PspPPI	RGGWCCY	1 cut(s)	662
PstNI	CAGNNNCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	101, 374, 516
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	71, 662
ScrFI	CCNGG	1 cut(s)	503
SetI	ASST	8 cut(s)	43, 121, 270, 295, 301, 588, 664, 672
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	71, 662
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	6 cut(s)	5, 56, 254, 285, 351, 380
SseBI	AGGCCT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	501
TaqI	TCGA	3 cut(s)	333, 441, 635
TasI	AATT	6 cut(s)	5, 56, 254, 285, 351, 380
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	398, 545, 566
Tru1I	TTAA	3 cut(s)	101, 374, 516
Tru9I	TTAA	3 cut(s)	101, 374, 516
TscAI	CASTG	1 cut(s)	634
TspDTI	ATGAA	3 cut(s)	17, 49, 444
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	71, 662
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	5, 56
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.