Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Reverse (-)

30782026 .. 30785769

Gene Structure 3744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAAGAGAGCGAGAAAGTGAGAGAGTTGATCAGGAAGGAAGTTCAAGATTGGGATGACGAATTGGTTTGCAGAGCCCGATTCAAAGCCTTCAGTGGCCAACGATCCGATTGGGAACCCATTTACCTCTTCTGGAGAAACTTGATTCTCACCATCGCTCGGCAATTAGGCCTCTTCATCATTCAACCCTCTCACCTAAAGACCCATTGGTTCAATCGAGGAGGACTCACTCCCTTATGCCTCGACGACGTTTTGTTTGTGATGTACAATGAAGGTGAAATTGTGCCCACTGTGGATGTTGCGGACCCCACTTCGGGTCGTCTCTCCCAGATTTTCCGAAGAGTCACCAGCTCCGTGCTCGGCCTTGCTTCATCAACCCCAACTCCTCAGCTTCTCGTGTCCCATGATCGTCTCGTTCTTACCCCACTTCTCAAGGATAAAGCTGTTCAAATTGTGGAAGGTTTGTCGGAATGCCATTGGAATTCTTGGTGCATTGTCACCATGAAGAGGTTCCGGGACTTGTGTGGAGGACCCTTTGAAGGTTCTGCAATCTTGTCTCACTTGTCTGCGCAAGGGAAGGCGCGGTATCTCTCGTTCCCCAACAGGGGAGACTTATTCGAGGGCGTGAAAGTTTCCATTTCAGCATCTTCTGTTCCTAGTGTTTCAAGTTTAGATCGTGATGTTTTGCACTTGAATTGGACAAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGCCGCTGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCCGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGGGAGTTGAAGTTGGCGAATGAGAGTAGAGAAAAATGTGCAAACTTCTTGAACAGAGTGGTGGAAGTGCTTGATTTTATCGCAAATGCTGAATTGACAAAGAAGGTTTCTGAAGCCGTCCAAATTGGAGCTAAAGCTATAAAGGAAAATAGGATTAGTATGGAAGAAGTCGAAGATAGCCTACAAGAAATTGAGGAGAGCATTGATACATTAAAGCAATTAGAAAATGTTATAGGTAATTTCTTATTCAACAGAAAATTTAAAGTAAAGATCTTTTTGAATTGGTGGGTTGCAGTATTATCATGGAGGAAAGGCTTTTTGTTATTATATCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

384

Amino Acids

43.93

Weight (kDa)

8.55

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_CHMP7_1st	PF25880	15 - 96	7.2e-24	CHMP7 N-terminal winged helix domain
Snf7	PF03357	229 - 352	2.1e-12	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	570
AccII	CGCG	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	785
AciI	CCGC	4 cut(s)	302, 583, 739, 742
AclI	AACGTT	1 cut(s)	752
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	481, 1073
AcuI	CTGAAG	2 cut(s)	76, 948
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	7 cut(s)	159, 313, 314, 507, 539, 604, 605
AluBI	AGCT	6 cut(s)	351, 391, 443, 773, 947, 953
AluI	AGCT	6 cut(s)	351, 391, 443, 773, 947, 953
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	5 cut(s)	326, 416, 561, 603, 703
AlwI	GGATC	1 cut(s)	99
Aor13HI	TCCGGA	1 cut(s)	785
AoxI	GGCC	3 cut(s)	97, 169, 361
ApoI	RAATTY	2 cut(s)	481, 1073
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	571, 583
AspS9I	GGNCC	2 cut(s)	304, 530
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	5 cut(s)	142, 185, 287, 337, 490
AvaII	GGWCC	2 cut(s)	304, 530
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	917
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	5 cut(s)	326, 416, 561, 603, 703
BfaI	CTAG	1 cut(s)	657
BglII	AGATCT	1 cut(s)	1086
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	304, 530
BmgT120I	GGNCC	2 cut(s)	304, 530
BmiI	GGNNCC	4 cut(s)	117, 306, 512, 532
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	785
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 812, 842
Bsc4I	CCNNNNNNNGG	7 cut(s)	159, 313, 314, 507, 539, 604, 605
BseAI	TCCGGA	1 cut(s)	785
BseGI	GGATG	2 cut(s)	61, 301
BseLI	CCNNNNNNNGG	7 cut(s)	159, 313, 314, 507, 539, 604, 605
BseMII	CTCAG	2 cut(s)	401, 797
BseRI	GAGGAG	3 cut(s)	234, 375, 1025
BseSI	GKGCMC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	3 cut(s)	99, 171, 363
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	514, 786
BslFI	GGGAC	2 cut(s)	385, 530
BslI	CCNNNNNNNGG	7 cut(s)	159, 313, 314, 507, 539, 604, 605
BsmAI	GTCTC	5 cut(s)	326, 416, 561, 603, 703
BsmBI	CGTCTC	2 cut(s)	326, 416
BsmFI	GGGAC	2 cut(s)	385, 530
BsmI	GAATGC	2 cut(s)	476, 781
BsnI	GGCC	3 cut(s)	99, 171, 363
Bsp1286I	GDGCHC	3 cut(s)	79, 288, 360
Bsp13I	TCCGGA	1 cut(s)	785
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	5 cut(s)	30, 104, 406, 673, 1086
BspACI	CCGC	4 cut(s)	302, 583, 739, 742
BspANI	GGCC	3 cut(s)	99, 171, 363
BspCNI	CTCAG	2 cut(s)	400, 798
BspEI	TCCGGA	1 cut(s)	785
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	4 cut(s)	117, 306, 512, 532
BspPI	GGATC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	264
BssMI	GATC	5 cut(s)	30, 104, 406, 673, 1086
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	4 cut(s)	134, 179, 334, 500
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	2 cut(s)	387, 806
BstF5I	GGATG	2 cut(s)	61, 301
BstFNI	CGCG	1 cut(s)	583
BstHHI	GCGC	2 cut(s)	571, 583
BstKTI	GATC	5 cut(s)	33, 107, 409, 676, 1089
BstMAI	GTCTC	5 cut(s)	326, 416, 561, 603, 703
BstMBI	GATC	5 cut(s)	30, 104, 406, 673, 1086
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	1086
BstYI	RGATCY	1 cut(s)	1086
BsuRI	GGCC	3 cut(s)	99, 171, 363
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	61, 301
BtsIMutI	CAGTG	2 cut(s)	100, 288
Cac8I	GCNNGC	1 cut(s)	813
CfoI	GCGC	2 cut(s)	571, 583
Cfr13I	GGNCC	2 cut(s)	304, 530
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	404, 502, 812, 1119
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	387, 806
DpnI	GATC	5 cut(s)	32, 106, 408, 675, 1088
DpnII	GATC	5 cut(s)	30, 104, 406, 673, 1086
DraI	TTTAAA	1 cut(s)	1078
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	134, 179, 334, 500
EarI	CTCTTC	4 cut(s)	134, 179, 334, 500
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	304, 530
Eco57I	CTGAAG	2 cut(s)	76, 948
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	79
Esp3I	CGTCTC	2 cut(s)	326, 416
FaeI	CATG	4 cut(s)	407, 505, 815, 1122
FaiI	YATR	9 cut(s)	238, 405, 503, 813, 956, 977, 1049, 1120, 1144
FaqI	GGGAC	2 cut(s)	385, 530
FatI	CATG	4 cut(s)	403, 501, 811, 1118
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	2 cut(s)	68, 308
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	1 cut(s)	657
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	2 cut(s)	570, 582
GluI	GCNGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	99, 171, 363
HapII	CCGG	2 cut(s)	514, 786
HhaI	GCGC	2 cut(s)	571, 583
Hin1II	CATG	4 cut(s)	407, 505, 815, 1122
Hin6I	GCGC	2 cut(s)	569, 581
HinP1I	GCGC	2 cut(s)	569, 581
HinfI	GANTC	4 cut(s)	81, 145, 225, 342
HpaII	CCGG	2 cut(s)	514, 786
HphI	GGTGA	5 cut(s)	142, 185, 287, 337, 490
Hpy188I	TCNGA	5 cut(s)	109, 338, 469, 807, 928
Hpy188III	TCNNGA	6 cut(s)	34, 47, 133, 677, 786, 865
Hpy99I	CGWCG	2 cut(s)	248, 251
HpyAV	CCTTC	7 cut(s)	31, 100, 266, 452, 533, 571, 913
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	249, 752
HpyCH4V	TGCA	8 cut(s)	72, 492, 548, 688, 781, 815, 857, 1109
HpyF3I	CTNAG	2 cut(s)	387, 806
HpySE526I	ACGT	2 cut(s)	249, 752
Hsp92II	CATG	4 cut(s)	407, 505, 815, 1122
HspAI	GCGC	2 cut(s)	569, 581
Kpn2I	TCCGGA	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 104, 406, 673, 1086
LmnI	GCTCC	2 cut(s)	356, 944
LpnPI	CCDG	7 cut(s)	19, 118, 341, 361, 527, 589, 799
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	249, 752
MaeIII	GTNAC	2 cut(s)	343, 496
MalI	GATC	5 cut(s)	32, 106, 408, 675, 1088
MboI	GATC	5 cut(s)	30, 104, 406, 673, 1086
MboII	GAAGA	8 cut(s)	17, 121, 166, 351, 517, 639, 992, 1001
MflI	RGATCY	1 cut(s)	1086
MhlI	GDGCHC	3 cut(s)	79, 288, 360
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	219, 351
MmeI	TCCRAC	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	99
MroI	TCCGGA	1 cut(s)	785
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	755, 1028, 1077
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	744
MspI	CCGG	2 cut(s)	514, 786
MspR9I	CCNGG	1 cut(s)	515
Mva1269I	GAATGC	2 cut(s)	476, 781
MvnI	CGCG	1 cut(s)	583
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	5 cut(s)	30, 104, 406, 673, 1086
NlaIII	CATG	4 cut(s)	407, 505, 815, 1122
NlaIV	GGNNCC	4 cut(s)	117, 306, 512, 532
NmeAIII	GCCGAG	2 cut(s)	139, 339
NmuCI	GTSAC	2 cut(s)	343, 496
NsbI	TGCGCA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	815
PaeI	GCATGC	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	171
PctI	GAATGC	2 cut(s)	476, 781
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	81, 145
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	2 cut(s)	219, 350
PpsI	GAGTC	2 cut(s)	219, 350
PpuMI	RGGWCCY	1 cut(s)	530
Psp1406I	AACGTT	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	117, 306, 512, 532
PspPI	GGNCC	2 cut(s)	304, 530
PspPPI	RGGWCCY	1 cut(s)	530
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
PsuI	RGATCY	1 cut(s)	1086
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	755, 1028, 1077
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	5 cut(s)	30, 104, 406, 673, 1086
Sau96I	GGNCC	2 cut(s)	304, 530
SchI	GAGTC	2 cut(s)	219, 351
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	3 cut(s)	79, 288, 360
SfaNI	GCATC	1 cut(s)	653
SinI	GGWCC	2 cut(s)	304, 530
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	815
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	302, 583, 739, 742
SspMI	CTAG	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	252, 755
TaqI	TCGA	4 cut(s)	217, 243, 618, 987
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	2 cut(s)	81, 145
Tru1I	TTAA	3 cut(s)	755, 1028, 1077
Tru9I	TTAA	3 cut(s)	755, 1028, 1077
TscAI	CASTG	2 cut(s)	100, 295
TseFI	GTSAC	2 cut(s)	343, 496
Tsp45I	GTSAC	2 cut(s)	343, 496
TspDTI	ATGAA	4 cut(s)	166, 285, 360, 518
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	100, 295
VpaK11BI	GGWCC	2 cut(s)	304, 530
XapI	RAATTY	2 cut(s)	481, 1073
XceI	RCATGY	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.