Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Forward (+)

18432040 .. 18444730

Gene Structure 12691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGATCCTAAGGGCGATCCGTGAGGATCCGACTGTTAGATCATCGTTTAATTTCGATCCGACCGTGACCGATGGTTTGAGTTGGTGGACGATCGTGGATCGTATTTTGAGTAGTAAAGAAGATGCGGCGGGATTAGAGGCATTCCTGTGCGAATGTCTATGTACATATATTATTTATATATGTATTGATCTGTGGAGATCAATAGTGAAGTGGTTTTGTGGTGAGAAACAGGATGGGATTGAGGCGGGGATGGTTTTCTTCGTGAACCTGAGGTTGAATGCTTTGAGACACTACAGGATTCTGCTGGCAGATCCTCAAAATATTAGATACTTCAACTGTATGTTGGAAGATGGCACTATATTCATCTGTATGCACATTCTGAAATCCTCTGAAATCTTGATGTCTGTTGCTGCGGAGGTAAAGCTACAGATGAATGGAAAGTTTGTTCCTTATAGCCTATTGAGTGTATTGATTCAATCTCTGTTTTGGTTTATTCTGCACTGGGAAACAAGTAGGACTTGGCTTATACTTAGAGACAGGCATGGAGATTTGCTTCTCGCAAGAACTATTCTCACTGATAAAGCTGTTCTAATTGTGGAAGGTCTGTCGGAATGCCATTGGAATTCTTGGTGCATTGTCACCATGAAGAGGTTCCGGGACTTGTGTGGAGGACCCTTTGAAGGTTCTGCAATCTTGTCTCACTTGTCTGCGCAAGGGAAGGCGCGGTATCTCTCGTTTCCCAACAGGGGAGACTTATTCGAGGGTGTGAAAGTTTCCATTTCAGCGTCTTCTGTTCCTAGTGTTTCAAGTTTAGATCGTGATGTTTTGCACTTGAATTGGACGAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGCCGCTGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCCGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGGGAGTTGAAGTTGGCGAATGAGAGTAGAGAAAAATGTGCAAACTTCTTGAATAGAGTGGTGGAAGTTCTTGATTTTATCGCAAATGCTGAATTGACAAAGAAGGTTTCTGAAGCCATCCAAATTGGAGCTAAAGCTATAAAGGAAAATGGGATTAGTATGGAAGAAGTCGAAGATAGCCTACAAGAAATTGAGGAGAGCATTGATACATTAAAGCAATTAGAAAATGTTATAGAATCAACCCCCCTGTACTCAGTTACGGATGATGAAGAAAATATCGAAGAGGAGTTCAAGAAACTAGAACTGGATATTGGACTTGAAAACCATCACGAACCAATCCAGGAAACCGAGATTAATAATGCAGTAGAAACAGACATTTCAGAATCTGCTGAAGCGTTGATAGGTTCTTTATCAAATCTCAAGCTCGTGGATGGTGGTCAAGCAAGGATACCAGCAGTTCACAGCACTGCCTCGACAGCAAGAAACAACAAAACAAAAGGTCCTGAGCTTGCAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

492

Amino Acids

55.59

Weight (kDa)

5.29

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	276 - 433	8.8e-15	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	711
AccII	CGCG	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	926
AciI	CCGC	7 cut(s)	125, 128, 245, 413, 724, 880, 883
AclI	AACGTT	1 cut(s)	893
AclWI	GGATC	6 cut(s)	10, 20, 33, 50, 105, 305
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	1089, 1368
AfaI	GTAC	2 cut(s)	163, 1208
AfiI	CCNNNNNNNGG	3 cut(s)	648, 680, 746
AjnI	CCWGG	1 cut(s)	1296
AjuI	GAANNNNNNNTTGG	2 cut(s)	1251, 1283
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	7 cut(s)	424, 584, 914, 1088, 1094, 1381, 1465
AluI	AGCT	7 cut(s)	424, 584, 914, 1088, 1094, 1381, 1465
Alw26I	GTCTC	5 cut(s)	280, 528, 702, 744, 844
AlwI	GGATC	6 cut(s)	10, 20, 33, 50, 105, 305
AlwNI	CAGNNNCTG	1 cut(s)	1343
Aor13HI	TCCGGA	1 cut(s)	926
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AseI	ATTAAT	1 cut(s)	1311
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	712, 724
AspS9I	GGNCC	2 cut(s)	671, 1457
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	233, 631
AvaII	GGWCC	2 cut(s)	671, 1457
AxyI	CCTNAGG	2 cut(s)	8, 269
BamHI	GGATCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	1122, 1154
BauI	CACGAG	1 cut(s)	1382
BbsI	GAAGAC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	7 cut(s)	65, 227, 244, 344, 1082, 1290, 1382
BciT130I	CCWGG	1 cut(s)	1298
BciVI	GTATCC	1 cut(s)	1398
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	5 cut(s)	280, 528, 702, 744, 844
BfaI	CTAG	2 cut(s)	798, 1256
BfmI	CTRYAG	2 cut(s)	292, 425
BfuI	GTATCC	1 cut(s)	1398
BisI	GCNGC	3 cut(s)	126, 411, 883
BlsI	GCNGC	3 cut(s)	127, 412, 884
Bme1390I	CCNGG	2 cut(s)	656, 1298
Bme18I	GGWCC	2 cut(s)	671, 1457
BmgT120I	GGNCC	2 cut(s)	671, 1457
BmiI	GGNNCC	3 cut(s)	27, 653, 673
BmrFI	CCNGG	2 cut(s)	656, 1298
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	1461
BpuEI	CTTGAG	1 cut(s)	1361
BpuMI	CCSGG	1 cut(s)	656
BsaWI	WCCGGW	1 cut(s)	926
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	3 cut(s)	648, 680, 746
Bse1I	ACTGG	2 cut(s)	506, 1266
Bse21I	CCTNAGG	2 cut(s)	8, 269
BseAI	TCCGGA	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	1298
BseGI	GGATG	5 cut(s)	238, 255, 1074, 1225, 1393
BseLI	CCNNNNNNNGG	3 cut(s)	648, 680, 746
BseMII	CTCAG	4 cut(s)	260, 938, 1224, 1452
BseNI	ACTGG	2 cut(s)	506, 1266
BseRI	GAGGAG	2 cut(s)	1166, 1256
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	724
Bsh1285I	CGRYCG	2 cut(s)	63, 93
BsiEI	CGRYCG	2 cut(s)	63, 93
BsiSI	CCGG	2 cut(s)	655, 927
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	648, 680, 746
BsmAI	GTCTC	5 cut(s)	280, 528, 702, 744, 844
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	4 cut(s)	140, 283, 617, 922
Bsp13I	TCCGGA	1 cut(s)	926
Bsp1407I	TGTACA	1 cut(s)	161
BspACI	CCGC	7 cut(s)	125, 128, 245, 413, 724, 880, 883
BspCNI	CTCAG	4 cut(s)	261, 939, 1223, 1453
BspEI	TCCGGA	1 cut(s)	926
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	27, 653, 673
BspPI	GGATC	6 cut(s)	10, 20, 33, 50, 105, 305
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	506, 1266
BssSI	CACGAG	1 cut(s)	1382
Bst2BI	CACGAG	1 cut(s)	1382
Bst2UI	CCWGG	1 cut(s)	1298
Bst4CI	ACNGT	3 cut(s)	34, 64, 338
Bst6I	CTCTTC	2 cut(s)	641, 1233
BstAUI	TGTACA	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	306, 954, 1467
BstDEI	CTNAG	6 cut(s)	8, 269, 530, 947, 1210, 1461
BstF5I	GGATG	5 cut(s)	238, 255, 1074, 1225, 1393
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	712, 724
BstMAI	GTCTC	5 cut(s)	280, 528, 702, 744, 844
BstMCI	CGRYCG	2 cut(s)	63, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	1433
BstNI	CCWGG	1 cut(s)	1298
BstNSI	RCATGY	1 cut(s)	956
BstSCI	CCNGG	2 cut(s)	654, 1296
BstSFI	CTRYAG	2 cut(s)	292, 425
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	2 cut(s)	25, 310
BstYI	RGATCY	2 cut(s)	25, 310
Bsu36I	CCTNAGG	2 cut(s)	8, 269
BsuI	GTATCC	1 cut(s)	1398
BtsCI	GGATG	5 cut(s)	238, 255, 1074, 1225, 1393
BtsI	GCAGTG	1 cut(s)	1422
BtsIMutI	CAGTG	3 cut(s)	499, 573, 1422
Cac8I	GCNNGC	3 cut(s)	306, 954, 1467
CaiI	CAGNNNCTG	1 cut(s)	1343
CfoI	GCGC	2 cut(s)	712, 724
Cfr13I	GGNCC	2 cut(s)	671, 1457
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	2 cut(s)	162, 1207
CviAII	CATG	3 cut(s)	542, 643, 953
CviQI	GTAC	2 cut(s)	162, 1207
DdeI	CTNAG	6 cut(s)	8, 269, 530, 947, 1210, 1461
Eam1104I	CTCTTC	2 cut(s)	641, 1233
EarI	CTCTTC	2 cut(s)	641, 1233
Eco47I	GGWCC	2 cut(s)	671, 1457
Eco57I	CTGAAG	2 cut(s)	1089, 1368
Eco81I	CCTNAGG	2 cut(s)	8, 269
EcoO109I	RGGNCCY	2 cut(s)	671, 1457
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	1296
FaeI	CATG	3 cut(s)	545, 646, 956
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	3 cut(s)	541, 642, 952
FauI	CCCGC	2 cut(s)	121, 238
Fnu4HI	GCNGC	3 cut(s)	126, 411, 883
FokI	GGATG	5 cut(s)	245, 262, 1061, 1232, 1400
Fsp4HI	GCNGC	3 cut(s)	126, 411, 883
FspBI	CTAG	2 cut(s)	798, 1256
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	2 cut(s)	711, 723
GluI	GCNGC	3 cut(s)	126, 411, 883
HapII	CCGG	2 cut(s)	655, 927
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	2 cut(s)	712, 724
Hin1II	CATG	3 cut(s)	545, 646, 956
Hin6I	GCGC	2 cut(s)	710, 722
HinP1I	GCGC	2 cut(s)	710, 722
HinfI	GANTC	4 cut(s)	298, 472, 1193, 1340
HpaII	CCGG	2 cut(s)	655, 927
HphI	GGTGA	2 cut(s)	233, 631
Hpy166II	GTNNAC	3 cut(s)	87, 265, 1417
Hpy188I	TCNGA	8 cut(s)	30, 60, 381, 391, 610, 948, 1069, 1339
Hpy188III	TCNNGA	9 cut(s)	262, 397, 818, 927, 1006, 1028, 1249, 1286, 1460
Hpy8I	GTNNAC	3 cut(s)	87, 265, 1417
HpyAV	CCTTC	4 cut(s)	593, 674, 712, 1054
HpyCH4III	ACNGT	3 cut(s)	34, 64, 338
HpyCH4IV	ACGT	1 cut(s)	893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1433
HpyF3I	CTNAG	6 cut(s)	8, 269, 530, 947, 1210, 1461
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	3 cut(s)	545, 646, 956
HspAI	GCGC	2 cut(s)	710, 722
Kpn2I	TCCGGA	1 cut(s)	926
LmnI	GCTCC	1 cut(s)	1085
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	798, 1256
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	3 cut(s)	64, 637, 1213
MboII	GAAGA	9 cut(s)	131, 250, 359, 658, 780, 1133, 1142, 1238, 1250
MflI	RGATCY	2 cut(s)	25, 310
MluCI	AATT	9 cut(s)	49, 591, 622, 835, 873, 1049, 1080, 1146, 1175
MmeI	TCCRAC	4 cut(s)	53, 83, 324, 588
MroI	TCCGGA	1 cut(s)	926
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	4 cut(s)	48, 896, 1169, 1311
MslI	CAYNNNNRTG	2 cut(s)	145, 368
MspA1I	CMGCKG	1 cut(s)	885
MspI	CCGG	2 cut(s)	655, 927
MspR9I	CCNGG	2 cut(s)	656, 1298
Mva1269I	GAATGC	4 cut(s)	140, 283, 617, 922
MvaI	CCWGG	1 cut(s)	1298
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	1 cut(s)	1433
NciI	CCSGG	1 cut(s)	656
NlaIII	CATG	3 cut(s)	545, 646, 956
NlaIV	GGNNCC	3 cut(s)	27, 653, 673
NmuCI	GTSAC	2 cut(s)	64, 637
NsbI	TGCGCA	1 cut(s)	711
NspI	RCATGY	1 cut(s)	956
PaeI	GCATGC	1 cut(s)	956
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	4 cut(s)	140, 283, 617, 922
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	298, 472, 1193, 1340
PfoI	TCCNGGA	2 cut(s)	654, 1296
PkrI	GCNGC	3 cut(s)	127, 412, 884
Ple19I	CGATCG	1 cut(s)	93
PpuMI	RGGWCCY	2 cut(s)	671, 1457
PshBI	ATTAAT	1 cut(s)	1311
Psp1406I	AACGTT	1 cut(s)	893
Psp5II	RGGWCCY	2 cut(s)	671, 1457
Psp6I	CCWGG	1 cut(s)	1296
PspGI	CCWGG	1 cut(s)	1296
PspN4I	GGNNCC	3 cut(s)	27, 653, 673
PspPI	GGNCC	2 cut(s)	671, 1457
PspPPI	RGGWCCY	2 cut(s)	671, 1457
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	2 cut(s)	25, 310
PvuI	CGATCG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	163, 1208
RsaNI	GTAC	2 cut(s)	162, 1207
RseI	CAYNNNNRTG	2 cut(s)	145, 368
SaqAI	TTAA	4 cut(s)	48, 896, 1169, 1311
SatI	GCNGC	3 cut(s)	126, 411, 883
Sau96I	GGNCC	2 cut(s)	671, 1457
ScrFI	CCNGG	2 cut(s)	656, 1298
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	2 cut(s)	292, 425
SinI	GGWCC	2 cut(s)	671, 1457
SmiMI	CAYNNNNRTG	2 cut(s)	145, 368
SmlI	CTYRAG	1 cut(s)	1376
SmoI	CTYRAG	1 cut(s)	1376
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	9 cut(s)	49, 591, 622, 835, 873, 1049, 1080, 1146, 1175
SsiI	CCGC	7 cut(s)	125, 128, 245, 413, 724, 880, 883
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	798, 1256
StyD4I	CCNGG	2 cut(s)	654, 1296
TaaI	ACNGT	3 cut(s)	34, 64, 338
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	5 cut(s)	54, 759, 1128, 1236, 1430
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	9 cut(s)	49, 591, 622, 835, 873, 1049, 1080, 1146, 1175
TatI	WGTACW	2 cut(s)	161, 1206
TauI	GCSGC	2 cut(s)	128, 885
TfiI	GAWTC	4 cut(s)	298, 472, 1193, 1340
Tru1I	TTAA	4 cut(s)	48, 896, 1169, 1311
Tru9I	TTAA	4 cut(s)	48, 896, 1169, 1311
TscAI	CASTG	3 cut(s)	506, 580, 1429
TseFI	GTSAC	2 cut(s)	64, 637
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	2 cut(s)	64, 637
TspDTI	ATGAA	4 cut(s)	352, 446, 659, 1239
TspGWI	ACGGA	2 cut(s)	8, 1232
TspRI	CASTG	3 cut(s)	506, 580, 1429
VpaK11BI	GGWCC	2 cut(s)	671, 1457
VspI	ATTAAT	1 cut(s)	1311
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	956
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	2 cut(s)	798, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.