AT3G62620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005649
Physical Location & Seq
Forward (+)
23159656 .. 23161949
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62620.8

Sequence Viewer

Length: 1077 bp
ATGTTTGCGGCGGTGAGTGTACGAGCTTCTCTCAAAACTTTGTTCCATGGAAGACACAGCTCATCTTACAGCCGATATTGTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAGATTCAGTGATGGAAATCGGATTCTGAATAGCTTGAAATTATCTGGAAATGGAGTAGGAATCAAACTGTTCAACTGCGGATTTCATAGTTCTCCACAGTGTTGTACATCAGAATCTGATGTAGGAGTGAAAACTCATGCACCTGCGTTATTTAGTCATCTTGAGGATGATTATTTCTCAGAGTTGGGTCCTGTAGAAAAAGAAGTGGATGAGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGTGATATCTCTGAAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAGCTAGCTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGAAAGTAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAAGATGCTACAGATTCAAAGGTTTCATTCTCCAAGCCAACTAAGTCATCGTCTCAAGTTCAAGATCAGAAATCCAAATCTCAAAAGAAAATCAGTCCCAGTTCTGAGCCGGAAAACGAAACTATCTCCAAGGGTTCTGCGACCTCCAATACACTCTCTTCAGTACTCGTTATAAGGATTGGTAATCTAAACTCGAAAACAGCTGATTCATTGATACACTCGATGTGCTTTTCGATTGGCCCTCTCGAAGGGCTTACTAGGGTTAATGAGGACACTGTTGACGTTTTATTTAGATTGAAAGACCTGAAGGAAGCAGATTCTATACTGGAAGAGCTAAACGATGCAACCGTAGATAACTCTCAATGGACGGCTGAGATTGTACTGGAAGCCGAAGAAGCTTCCAAAAATCAAATGGGTATGAGGATCACCAGTTGTCTCGAAGATTTGGATAAGCAACTGTTAATGCAACGCATTCTTGGAAAAGACTTGGAAGTTCTGCTCCATTCAGTTATGCATCTGGAAAATCACCCAATGGCTCGAGGAAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.43

Weight (kDa)

8.37

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 268
AciI CCGC 3 cut(s) 8, 11, 195
AclWI GGATC 1 cut(s) 956
AcuI CTGAAG 2 cut(s) 669, 851
AfaI GTAC 4 cut(s) 21, 223, 690, 906
AfiI CCNNNNNNNGG 1 cut(s) 773
AgsI TTSAA 5 cut(s) 154, 190, 543, 587, 823
AluBI AGCT 8 cut(s) 26, 60, 150, 418, 422, 728, 859, 923
AluI AGCT 8 cut(s) 26, 60, 150, 418, 422, 728, 859, 923
Alw26I GTCTC 3 cut(s) 582, 965, 1065
AlwI GGATC 1 cut(s) 956
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 1062
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 305, 764
AsuHPI GGTGA 4 cut(s) 25, 510, 943, 1043
AsuII TTCGAA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 1062
AvaII GGWCC 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 58, 503
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 909
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BcoDI GTCTC 3 cut(s) 582, 965, 1065
BfaI CTAG 2 cut(s) 419, 783
BfmI CTRYAG 2 cut(s) 309, 534
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 9, 90
BlsI GCNGC 2 cut(s) 10, 91
BmcAI AGTACT 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 305
BmeT110I CYCGRG 1 cut(s) 1062
BmgT120I GGNCC 2 cut(s) 305, 764
BmiI GGNNCC 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 4 cut(s) 520, 521, 856, 1048
BmtI GCTAGC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 2 cut(s) 58, 503
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 299, 564
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 46, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 773
Bse1I ACTGG 5 cut(s) 362, 624, 855, 912, 954
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 46, 654
BseGI GGATG 2 cut(s) 289, 331
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 773
BseMII CTCAG 4 cut(s) 309, 345, 621, 888
BseNI ACTGG 5 cut(s) 362, 624, 855, 912, 954
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 765
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 773
BsmAI GTCTC 3 cut(s) 582, 965, 1065
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 1 cut(s) 765
BsoBI CYCGRG 1 cut(s) 1062
Bsp119I TTCGAA 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 589, 948
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 3 cut(s) 8, 11, 195
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 4 cut(s) 308, 346, 622, 889
BspLI GGNNCC 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 956
BspQI GCTCTTC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 5 cut(s) 362, 624, 855, 912, 954
BssECI CCNNGG 2 cut(s) 46, 654
BssMI GATC 2 cut(s) 589, 948
BssT1I CCWWGG 2 cut(s) 46, 654
Bst4CI ACNGT 5 cut(s) 186, 216, 802, 874, 984
Bst6I CTCTTC 3 cut(s) 688, 849, 1063
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 5 cut(s) 295, 354, 567, 630, 897
BstDSI CCRYGG 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 2 cut(s) 289, 331
BstKTI GATC 2 cut(s) 592, 951
BstMAI GTCTC 3 cut(s) 582, 965, 1065
BstMBI GATC 2 cut(s) 589, 948
BstMWI GCNNNNNNNGC 2 cut(s) 530, 920
BstSFI CTRYAG 2 cut(s) 309, 534
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 2 cut(s) 58, 503
BsuRI GGCC 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 289, 331
BtsIMutI CAGTG 4 cut(s) 130, 221, 369, 798
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 305, 764
Csp6I GTAC 4 cut(s) 20, 222, 689, 905
CviAII CATG 2 cut(s) 47, 254
CviQI GTAC 4 cut(s) 20, 222, 689, 905
DdeI CTNAG 5 cut(s) 295, 354, 567, 630, 897
DpnI GATC 2 cut(s) 591, 950
DpnII GATC 2 cut(s) 589, 948
Eam1104I CTCTTC 3 cut(s) 688, 849, 1063
EarI CTCTTC 3 cut(s) 688, 849, 1063
Eco130I CCWWGG 2 cut(s) 46, 654
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 669, 851
Eco88I CYCGRG 1 cut(s) 1062
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 305
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 46, 654
EcoT22I ATGCAT 2 cut(s) 514, 1041
ErhI CCWWGG 2 cut(s) 46, 654
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 2 cut(s) 50, 257
FaiI YATR 7 cut(s) 48, 204, 255, 698, 848, 944, 1037
FaqI GGGAC 1 cut(s) 606
FatI CATG 2 cut(s) 46, 253
Fnu4HI GCNGC 2 cut(s) 9, 90
FokI GGATG 2 cut(s) 296, 338
Fsp4HI GCNGC 2 cut(s) 9, 90
FspBI CTAG 2 cut(s) 419, 783
GluI GCNGC 2 cut(s) 9, 90
HaeIII GGCC 1 cut(s) 765
HapII CCGG 1 cut(s) 635
Hin1II CATG 2 cut(s) 50, 257
HincII GTYRAC 3 cut(s) 351, 453, 805
HindII GTYRAC 3 cut(s) 351, 453, 805
HindIII AAGCTT 1 cut(s) 921
HinfI GANTC 8 cut(s) 120, 139, 177, 230, 428, 539, 731, 842
HpaI GTTAAC 1 cut(s) 351
HpaII CCGG 1 cut(s) 635
HphI GGTGA 4 cut(s) 25, 510, 943, 1043
Hpy166II GTNNAC 4 cut(s) 20, 351, 453, 805
Hpy188I TCNGA 9 cut(s) 138, 144, 229, 235, 298, 375, 427, 594, 631
Hpy188III TCNNGA 6 cut(s) 162, 278, 587, 770, 962, 1043
Hpy8I GTNNAC 4 cut(s) 20, 351, 453, 805
HpyAV CCTTC 2 cut(s) 767, 826
HpyCH4III ACNGT 5 cut(s) 186, 216, 802, 874, 984
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 6 cut(s) 89, 257, 512, 869, 991, 1039
HpyF10VI GCNNNNNNNGC 2 cut(s) 530, 920
HpyF3I CTNAG 5 cut(s) 295, 354, 567, 630, 897
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 2 cut(s) 50, 257
KspAI GTTAAC 1 cut(s) 351
Kzo9I GATC 2 cut(s) 589, 948
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 2 cut(s) 415, 1029
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 4 cut(s) 520, 521, 856, 1048
MaeI CTAG 2 cut(s) 419, 783
MaeII ACGT 1 cut(s) 807
MalI GATC 2 cut(s) 591, 950
MboI GATC 2 cut(s) 589, 948
MluCI AATT 2 cut(s) 84, 155
MnlI CCTC 6 cut(s) 274, 679, 777, 787, 939, 1058
Mph1103I ATGCAT 2 cut(s) 514, 1041
MseI TTAA 3 cut(s) 350, 789, 986
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 996
MwoI GCNNNNNNNGC 2 cut(s) 530, 920
NcoI CCATGG 1 cut(s) 46
NdeII GATC 2 cut(s) 589, 948
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 2 cut(s) 50, 257
NlaIV GGNNCC 1 cut(s) 306
NsiI ATGCAT 2 cut(s) 514, 1041
NspV TTCGAA 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 1062
PaqCI CACCTGC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 870
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 8 cut(s) 120, 139, 177, 230, 428, 539, 731, 842
PkrI GCNGC 2 cut(s) 10, 91
PpuMI RGGWCCY 1 cut(s) 305
PsiI TTATAA 1 cut(s) 698
Psp5II RGGWCCY 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 305, 764
PspPPI RGGWCCY 1 cut(s) 305
PspXI VCTCGAGB 1 cut(s) 1062
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 4 cut(s) 21, 223, 690, 906
RsaNI GTAC 4 cut(s) 20, 222, 689, 905
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 3 cut(s) 350, 789, 986
SatI GCNGC 2 cut(s) 9, 90
Sau3AI GATC 2 cut(s) 589, 948
Sau96I GGNCC 2 cut(s) 305, 764
ScaI AGTACT 1 cut(s) 690
SfaNI GCATC 4 cut(s) 520, 521, 856, 1048
SfcI CTRYAG 2 cut(s) 309, 534
Sfr274I CTCGAG 1 cut(s) 1062
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 1062
SmlI CTYRAG 3 cut(s) 278, 579, 1062
SmoI CTYRAG 3 cut(s) 278, 579, 1062
Sse9I AATT 2 cut(s) 84, 155
SsiI CCGC 3 cut(s) 8, 11, 195
SspMI CTAG 2 cut(s) 419, 783
StyI CCWWGG 2 cut(s) 46, 654
TaaI ACNGT 5 cut(s) 186, 216, 802, 874, 984
TaiI ACGT 1 cut(s) 810
TaqI TCGA 7 cut(s) 98, 719, 746, 758, 771, 963, 1063
TasI AATT 2 cut(s) 84, 155
TatI WGTACW 3 cut(s) 221, 688, 904
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 8 cut(s) 120, 139, 177, 230, 428, 539, 731, 842
Tru1I TTAA 3 cut(s) 350, 789, 986
Tru9I TTAA 3 cut(s) 350, 789, 986
TscAI CASTG 4 cut(s) 130, 221, 369, 805
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 191, 540, 723
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 4 cut(s) 130, 221, 369, 805
VpaK11BI GGWCC 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 771
XcmI CCANNNNNNNNNTGG 2 cut(s) 471, 934
XhoI CTCGAG 1 cut(s) 1062
XspI CTAG 2 cut(s) 419, 783
ZrmI AGTACT 1 cut(s) 690
Zsp2I ATGCAT 2 cut(s) 514, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.