Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

29183035 .. 29185457

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTTAACCCTAATAGGCTCCGCCTCCGAGCCATCACCGGTAAACATGGCTTGCTTTCACTCGCAGCACTAAAGCTTCGATGTAATGCTTGGATAGATAATTCTATCATCCCATTCAGTACGAGGGCATCATCTGGAGATGATGACTTCTCAGAATTGGGATCCCCAGTGTCTAAAGCTGCAACTAGTCTTCTAAAGTTGATGACGGAGAAGCCTGAGCCTTATAGTAAGAAAGCTAATTGTAGGAAAAAACGGTTTGGAGTGCCGTTAGAAAGCAGCAACAGCTTGAAAGAGACTGTAGGAGCAAGCAAGAGACCAGTTTTGTCTGATGCGGTTTCTGAAAACTGCTTTGATCCTACAATTCATCCACTAGGTGATAAAGGGGCAGTTAACATTAGGATTACAAACATCAACTTAGAAACCACTGATTCCGCAATACACTCCATGTGTACGTCCTGTGGTAGCTTGGAGGGGCTTGTGAGAACAAAAGAGGATGCGGTGGACGCCTTCTTTCGCATCAAAGACAATGCTGACATAGACAGCATACTTGCAAAGTTGAATGATACAGTTCTGAATGACCATAAATGGTCTGCTAATTTACATCAAAGAGATTCCATTCCTGCTGTGACGAGCAAGCAAAGTAATGCAAGCTTGAATGTGGGATTGCATATAAGCCATCAGTTGGCTGAAGTGAGACGGCAAGTCTCCATGAAGACCGTGTGCGTAGAAGATTTGGAGTATCTGCATCATGCCTTGTTGCACCTTGAGGCTCATCCTGACAGCATGACTAGTATCTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.53

Weight (kDa)

7.17

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	682
AciI	CCGC	4 cut(s)	22, 332, 432, 497
AclWI	GGATC	3 cut(s)	156, 169, 347
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	121, 451
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	289, 559, 655
AhdI	GACNNNNNGTC	1 cut(s)	701
AhlI	ACTAGT	2 cut(s)	185, 788
AluBI	AGCT	6 cut(s)	76, 179, 236, 285, 465, 651
AluI	AGCT	6 cut(s)	76, 179, 236, 285, 465, 651
Alw26I	GTCTC	4 cut(s)	287, 307, 688, 709
AlwI	GGATC	3 cut(s)	156, 169, 347
ApeKI	GCWGC	3 cut(s)	65, 179, 276
AsiGI	ACCGGT	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	28, 386
BamHI	GGATCC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	182, 719
BbvI	GCAGC	3 cut(s)	77, 166, 288
BccI	CCATC	2 cut(s)	41, 684
BceAI	ACGGC	2 cut(s)	250, 713
BcoDI	GTCTC	4 cut(s)	287, 307, 688, 709
BcuI	ACTAGT	2 cut(s)	185, 788
BfaI	CTAG	3 cut(s)	186, 371, 789
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	3 cut(s)	66, 180, 277
BlsI	GCNGC	3 cut(s)	67, 181, 278
BmeRI	GACNNNNNGTC	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	20, 163
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	5 cut(s)	137, 319, 484, 525, 754
BmuI	ACTGGG	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	182, 719
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	798
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	167, 317
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	5 cut(s)	108, 364, 499, 772, 808
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMII	CTCAG	2 cut(s)	165, 207
BseNI	ACTGG	2 cut(s)	167, 317
BseXI	GCAGC	3 cut(s)	77, 166, 288
BshTI	ACCGGT	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	4 cut(s)	287, 307, 688, 709
BsmBI	CGTCTC	1 cut(s)	688
Bso31I	GGTCTC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	161, 352
BspACI	CCGC	4 cut(s)	22, 332, 432, 497
BspCNI	CTCAG	2 cut(s)	164, 208
BspLI	GGNNCC	2 cut(s)	20, 163
BspPI	GGATC	3 cut(s)	156, 169, 347
BspTNI	GGTCTC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	167, 317
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	2 cut(s)	161, 352
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	798
Bst4CI	ACNGT	4 cut(s)	255, 298, 568, 718
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	53, 307, 635, 649
BstDEI	CTNAG	3 cut(s)	151, 216, 415
BstF5I	GGATG	5 cut(s)	108, 364, 499, 772, 808
BstKTI	GATC	2 cut(s)	164, 355
BstMAI	GTCTC	4 cut(s)	287, 307, 688, 709
BstMBI	GATC	2 cut(s)	161, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 503
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	77, 166, 288
BstV2I	GAAGAC	2 cut(s)	182, 719
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtsCI	GGATG	5 cut(s)	108, 364, 499, 772, 808
BtsIMutI	CAGTG	2 cut(s)	174, 423
Cac8I	GCNNGC	4 cut(s)	53, 307, 635, 649
Cfr10I	RCCGGY	1 cut(s)	38
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	120, 450
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	5 cut(s)	47, 445, 709, 749, 784
CviQI	GTAC	2 cut(s)	120, 450
DdeI	CTNAG	3 cut(s)	151, 216, 415
DpnI	GATC	2 cut(s)	163, 354
DpnII	GATC	2 cut(s)	161, 352
DraIII	CACNNNGTG	1 cut(s)	374
DriI	GACNNNNNGTC	1 cut(s)	701
Eam1105I	GACNNNNNGTC	1 cut(s)	701
EciI	GGCGGA	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	688
FaeI	CATG	5 cut(s)	50, 448, 712, 752, 787
FatI	CATG	5 cut(s)	46, 444, 708, 748, 783
Fnu4HI	GCNGC	3 cut(s)	66, 180, 277
FokI	GGATG	4 cut(s)	95, 351, 506, 759
Fsp4HI	GCNGC	3 cut(s)	66, 180, 277
FspBI	CTAG	3 cut(s)	186, 371, 789
GluI	GCNGC	3 cut(s)	66, 180, 277
GsuI	CTGGAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	50, 448, 712, 752, 787
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	74, 649
HinfI	GANTC	2 cut(s)	428, 611
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	28, 386
Hpy166II	GTNNAC	4 cut(s)	44, 391, 450, 502
Hpy188I	TCNGA	5 cut(s)	29, 154, 328, 340, 573
Hpy188III	TCNNGA	2 cut(s)	135, 776
Hpy8I	GTNNAC	4 cut(s)	44, 391, 450, 502
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	4 cut(s)	255, 298, 568, 718
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	6 cut(s)	182, 551, 647, 667, 745, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 503
HpyF3I	CTNAG	3 cut(s)	151, 216, 415
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	5 cut(s)	50, 448, 712, 752, 787
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	161, 352
LmnI	GCTCC	2 cut(s)	24, 302
LpnPI	CCDG	8 cut(s)	52, 120, 180, 228, 330, 469, 633, 789
Lsp1109I	GCAGC	3 cut(s)	77, 166, 288
LweI	GCATC	5 cut(s)	137, 319, 484, 525, 754
MaeI	CTAG	3 cut(s)	186, 371, 789
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	163, 354
MboI	GATC	2 cut(s)	161, 352
MboII	GAAGA	3 cut(s)	182, 724, 740
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	5 cut(s)	100, 155, 238, 360, 595
MnlI	CCTC	5 cut(s)	35, 117, 463, 484, 760
MseI	TTAA	2 cut(s)	6, 390
MspI	CCGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	282, 503
NdeII	GATC	2 cut(s)	161, 352
NlaIII	CATG	5 cut(s)	50, 448, 712, 752, 787
NlaIV	GGNNCC	2 cut(s)	20, 163
NmuCI	GTSAC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	428, 611
PflMI	CCANNNNNTGG	1 cut(s)	682
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	67, 181, 278
PspN4I	GGNNCC	2 cut(s)	20, 163
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	2 cut(s)	121, 451
RsaNI	GTAC	2 cut(s)	120, 450
SaqAI	TTAA	2 cut(s)	6, 390
SatI	GCNGC	3 cut(s)	66, 180, 277
Sau3AI	GATC	2 cut(s)	161, 352
SetI	ASST	9 cut(s)	78, 181, 238, 287, 376, 455, 467, 653, 765
SfaNI	GCATC	5 cut(s)	137, 319, 484, 525, 754
SfcI	CTRYAG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SpeI	ACTAGT	2 cut(s)	185, 788
Sse9I	AATT	5 cut(s)	100, 155, 238, 360, 595
SsiI	CCGC	4 cut(s)	22, 332, 432, 497
SspMI	CTAG	3 cut(s)	186, 371, 789
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	4 cut(s)	255, 298, 568, 718
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	1 cut(s)	79
TasI	AATT	5 cut(s)	100, 155, 238, 360, 595
TfiI	GAWTC	2 cut(s)	428, 611
Tru1I	TTAA	2 cut(s)	6, 390
Tru9I	TTAA	2 cut(s)	6, 390
TscAI	CASTG	2 cut(s)	174, 430
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	65, 179, 276
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	2 cut(s)	353, 725
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	174, 430
Van91I	CCANNNNNTGG	1 cut(s)	682
XspI	CTAG	3 cut(s)	186, 371, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.