Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

69288163 .. 69290726

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG487900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATTATTAACATGTCATGCGTACTTACAAATTTCAATTTCAATCAGAAAGCTAACCGTAGGAGAAAACCGTCTGGAGTGCCGTTAGAAAGCAGCACCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGAAGCAAGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTCGATCCTACAATTAGTCCACTAGTTGACAAAGAGGCAGTTAGCATTAGGATTGCCAACATCAACTCAGAGACCACTGATTCTGCGATACATTCTATGTGTACGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACACAAGAGGATGCAGTGGATGCCTTCTTTAGCGTTGAGGACAATGCTGACATAGACAGCATAGTTGCAAAGTTGAATGATACAGTCATGAATGACCATAAGTGGTCAGCTAAATTACATCATAGAGACTCCACTCCTGCTCTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTACATTTAAGCCGTCAGTTGGCTGAAGTGAAAAGGCAAGTCATCATGAAGACTGTGTGCATAGAAGATTTGGAGTATCTGCATAATGCCTTGGTGCACCTTGAAGCTCATTCTTGCAGCAGGACTAGTATTTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.76

Weight (kDa)

5.61

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	24, 286
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	37, 43, 106, 394, 602
AhlI	ACTAGT	2 cut(s)	205, 623
AluBI	AGCT	4 cut(s)	53, 102, 428, 605
AluI	AGCT	4 cut(s)	53, 102, 428, 605
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	142, 248, 438
Alw44I	GTGCAC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	593
ApeKI	GCWGC	2 cut(s)	93, 615
ApoI	RAATTY	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	105, 627
BceAI	ACGGC	2 cut(s)	67, 495
BcoDI	GTCTC	3 cut(s)	142, 248, 438
BcuI	ACTAGT	2 cut(s)	205, 623
BfaI	CTAG	2 cut(s)	206, 624
BisI	GCNGC	2 cut(s)	94, 616
BlsI	GCNGC	2 cut(s)	95, 617
BmsI	GCATC	2 cut(s)	319, 328
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	2 cut(s)	96, 146
BsaI	GGTCTC	2 cut(s)	142, 248
BsaJI	CCNNGG	2 cut(s)	588, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	588, 633
BseGI	GGATG	3 cut(s)	334, 343, 643
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	105, 627
BsiHKAI	GWGCWC	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	3 cut(s)	142, 248, 438
Bso31I	GGTCTC	2 cut(s)	142, 248
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	263
BspHI	TCATGA	2 cut(s)	405, 543
BspPI	GGATC	1 cut(s)	182
BspTNI	GGTCTC	2 cut(s)	142, 248
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	588, 633
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	2 cut(s)	588, 633
Bst4CI	ACNGT	4 cut(s)	59, 72, 403, 553
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	334, 343, 643
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	3 cut(s)	142, 248, 438
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 338
BstNSI	RCATGY	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	105, 627
BstV2I	GAAGAC	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	334, 343, 643
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	258, 339
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	2 cut(s)	405, 543
Csp6I	GTAC	2 cut(s)	23, 285
CviAII	CATG	4 cut(s)	13, 18, 406, 544
CviJI	RGCY	8 cut(s)	53, 102, 161, 310, 428, 510, 521, 605
CviKI_1	RGCY	8 cut(s)	53, 102, 161, 310, 428, 510, 521, 605
CviQI	GTAC	2 cut(s)	23, 285
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	588, 633
Eco31I	GGTCTC	2 cut(s)	142, 248
Eco57I	CTGAAG	1 cut(s)	543
EcoT14I	CCWWGG	2 cut(s)	588, 633
ErhI	CCWWGG	2 cut(s)	588, 633
FaeI	CATG	4 cut(s)	16, 21, 409, 547
FatI	CATG	4 cut(s)	12, 17, 405, 543
Fnu4HI	GCNGC	2 cut(s)	94, 616
FokI	GGATG	2 cut(s)	341, 350
Fsp4HI	GCNGC	2 cut(s)	94, 616
FspBI	CTAG	2 cut(s)	206, 624
GluI	GCNGC	2 cut(s)	94, 616
GsuI	CTGGAG	2 cut(s)	96, 146
Hin1II	CATG	4 cut(s)	16, 21, 409, 547
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	113, 263, 446
Hpy166II	GTNNAC	4 cut(s)	203, 211, 285, 595
Hpy188I	TCNGA	3 cut(s)	48, 253, 462
Hpy188III	TCNNGA	3 cut(s)	75, 406, 544
Hpy8I	GTNNAC	4 cut(s)	203, 211, 285, 595
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	4 cut(s)	59, 72, 403, 553
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	6 cut(s)	332, 386, 558, 580, 595, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 338
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	4 cut(s)	16, 21, 409, 547
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	60, 110, 112, 468, 604
Lsp1109I	GCAGC	2 cut(s)	105, 627
LweI	GCATC	2 cut(s)	319, 328
MaeI	CTAG	2 cut(s)	206, 624
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	559, 575
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	5 cut(s)	31, 37, 178, 195, 431
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	6 cut(s)	127, 160, 211, 298, 319, 349
MseI	TTAA	3 cut(s)	9, 489, 506
MwoI	GCNNNNNNNGC	2 cut(s)	99, 338
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	16, 21, 409, 547
NspI	RCATGY	1 cut(s)	16
PagI	TCATGA	2 cut(s)	405, 543
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	113, 263
PkrI	GCNGC	2 cut(s)	95, 617
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	12
RsaI	GTAC	2 cut(s)	24, 286
RsaNI	GTAC	2 cut(s)	23, 285
SaqAI	TTAA	3 cut(s)	9, 489, 506
SatI	GCNGC	2 cut(s)	94, 616
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	8 cut(s)	55, 104, 154, 171, 290, 430, 600, 607
SfaNI	GCATC	2 cut(s)	319, 328
SpeI	ACTAGT	2 cut(s)	205, 623
Sse9I	AATT	5 cut(s)	31, 37, 178, 195, 431
SspMI	CTAG	2 cut(s)	206, 624
StyI	CCWWGG	2 cut(s)	588, 633
TaaI	ACNGT	4 cut(s)	59, 72, 403, 553
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	186
TasI	AATT	5 cut(s)	31, 37, 178, 195, 431
TfiI	GAWTC	2 cut(s)	113, 263
Tru1I	TTAA	3 cut(s)	9, 489, 506
Tru9I	TTAA	3 cut(s)	9, 489, 506
TscAI	CASTG	2 cut(s)	265, 339
TseI	GCWGC	2 cut(s)	93, 615
TspDTI	ATGAA	2 cut(s)	422, 560
TspRI	CASTG	2 cut(s)	265, 339
VneI	GTGCAC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	2 cut(s)	206, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.