Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001865.1

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Reverse (-)

7700 .. 9295

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001865.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggcccgttactattttgctataatcgatcgacggcgtcccatttcctcgttgacactttggcgcggtttggggatgttgaaccctaataggctccggctccgagccttcaccgggaaacatggcttcatttcactggcagcggcaaagcttcgatgtagtgcttggatagacaagtctgtcaacacattcattacaagggcattgtcttcgtcttctggagatgatgacttctcagaattgggatcccctttgcctaaagctgcaactagtcttccgaagttgatgacggagaaacctgagccttataataagaaagctagccgtaggagaaaacggtctggagtgccgttagaaagcagcaccagcttgaaaaatgattcctcaaaactggagagtgtagaagcaagcaagagaccttttttggctgatgaagtttctgtaaattgctttgatcctacaattagtccactagttgacaaagaggcagttagcattaggattgccaacatcaactcagagaccactgattctgcgatacattctatgtgtacgtcctatggttgcttggaggggcttgtgcgaacaaaagaggatgcagtggatgccttctttagcgttgaggacaatgctgacatagacagcatagttgcaaagtatgaaactacttatattcttttgattccatggttgcttttgcattctctctcactgcataactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.8

Weight (kDa)

8.83

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 143
AclWI	GGATC	3 cut(s)	240, 253, 449
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	82, 373
AhlI	ACTAGT	2 cut(s)	269, 472
AluBI	AGCT	4 cut(s)	151, 263, 320, 369
AluI	AGCT	4 cut(s)	151, 263, 320, 369
Alw26I	GTCTC	2 cut(s)	409, 515
AlwI	GGATC	3 cut(s)	240, 253, 449
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	140, 263, 360
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	103
AsuNHI	GCTAGC	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	245
BbsI	GAAGAC	3 cut(s)	201, 207, 266
BbvI	GCAGC	3 cut(s)	152, 250, 372
BceAI	ACGGC	3 cut(s)	50, 309, 334
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	409, 515
BcuI	ACTAGT	2 cut(s)	269, 472
BfaI	CTAG	3 cut(s)	270, 321, 473
BisI	GCNGC	4 cut(s)	141, 144, 264, 361
BlsI	GCNGC	4 cut(s)	142, 145, 265, 362
Bme1390I	CCNGG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	95, 101, 247
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	586, 595
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	3 cut(s)	201, 207, 266
BpmI	CTGGAG	3 cut(s)	240, 363, 413
Bpu10I	CCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	2 cut(s)	409, 515
BsaJI	CCNNGG	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	141, 396
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	3 cut(s)	81, 601, 610
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	249, 291, 531
BseNI	ACTGG	2 cut(s)	141, 396
BseXI	GCAGC	3 cut(s)	152, 250, 372
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	97, 114
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	409, 515
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	409, 515
Bsp143I	GATC	3 cut(s)	28, 245, 454
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	2 cut(s)	66, 143
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	248, 292, 530
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	95, 101, 247
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	3 cut(s)	240, 253, 449
BspTNI	GGTCTC	2 cut(s)	409, 515
BsrI	ACTGG	2 cut(s)	141, 396
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	3 cut(s)	28, 245, 454
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	322, 409
BstDEI	CTNAG	3 cut(s)	235, 300, 517
BstDSI	CCRYGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	81, 601, 610
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	3 cut(s)	31, 248, 457
BstMAI	GTCTC	2 cut(s)	409, 515
BstMBI	GATC	3 cut(s)	28, 245, 454
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 605
BstSCI	CCNGG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	152, 250, 372
BstV2I	GAAGAC	3 cut(s)	201, 207, 266
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	686
BtsCI	GGATG	3 cut(s)	81, 601, 610
BtsI	GCAGTG	2 cut(s)	606, 710
BtsIMutI	CAGTG	4 cut(s)	134, 525, 606, 710
Cac8I	GCNNGC	2 cut(s)	322, 409
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	122, 687
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	235, 300, 517
DpnI	GATC	3 cut(s)	30, 247, 456
DpnII	GATC	3 cut(s)	28, 245, 454
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	686
Eco31I	GGTCTC	2 cut(s)	409, 515
EcoT14I	CCWWGG	1 cut(s)	686
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	2 cut(s)	125, 690
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	121, 686
Fnu4HI	GCNGC	4 cut(s)	141, 144, 264, 361
FokI	GGATG	3 cut(s)	88, 608, 617
Fsp4HI	GCNGC	4 cut(s)	141, 144, 264, 361
FspBI	CTAG	3 cut(s)	270, 321, 473
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	141, 144, 264, 361
GsuI	CTGGAG	3 cut(s)	240, 363, 413
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	97, 114
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	125, 690
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	3 cut(s)	54, 184, 478
HindII	GTYRAC	3 cut(s)	54, 184, 478
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	3 cut(s)	380, 530, 682
HpaII	CCGG	2 cut(s)	97, 114
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	5 cut(s)	54, 184, 470, 478, 552
Hpy188I	TCNGA	4 cut(s)	104, 238, 279, 520
Hpy188III	TCNNGA	2 cut(s)	219, 342
Hpy8I	GTNNAC	5 cut(s)	54, 184, 470, 478, 552
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	118, 619
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	266, 599, 653, 700, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 605
HpyF3I	CTNAG	3 cut(s)	235, 300, 517
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	125, 690
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	28, 245, 454
LmnI	GCTCC	2 cut(s)	99, 105
LpnPI	CCDG	8 cut(s)	110, 122, 127, 204, 312, 327, 377, 379
Lsp1109I	GCAGC	3 cut(s)	152, 250, 372
LweI	GCATC	2 cut(s)	586, 595
MaeI	CTAG	3 cut(s)	270, 321, 473
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	30, 247, 456
MboI	GATC	3 cut(s)	28, 245, 454
MboII	GAAGA	3 cut(s)	201, 207, 266
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	3 cut(s)	239, 445, 462
MnlI	CCTC	6 cut(s)	58, 394, 478, 565, 586, 616
MseI	TTAA	1 cut(s)	724
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	97, 114
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	700
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	366, 605
NciI	CCSGG	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	686
NdeII	GATC	3 cut(s)	28, 245, 454
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	125, 690
NlaIV	GGNNCC	3 cut(s)	95, 101, 247
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	380, 530, 682
PflFI	GACNNNGTC	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	142, 145, 265, 362
Ple19I	CGATCG	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	95, 101, 247
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	4 cut(s)	141, 144, 264, 361
Sau3AI	GATC	3 cut(s)	28, 245, 454
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	7 cut(s)	153, 265, 301, 322, 371, 421, 557
SfaNI	GCATC	2 cut(s)	586, 595
SpeI	ACTAGT	2 cut(s)	269, 472
Sse9I	AATT	3 cut(s)	239, 445, 462
SsiI	CCGC	2 cut(s)	66, 143
SspMI	CTAG	3 cut(s)	270, 321, 473
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	27, 31, 154
TasI	AATT	3 cut(s)	239, 445, 462
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	380, 530, 682
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	4 cut(s)	141, 532, 606, 717
TseI	GCWGC	3 cut(s)	140, 263, 360
TspDTI	ATGAA	4 cut(s)	118, 181, 447, 675
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	4 cut(s)	141, 532, 606, 717
Tth111I	GACNNNGTC	1 cut(s)	36
XspI	CTAG	3 cut(s)	270, 321, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.