Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

69776202 .. 69778309

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG519200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTGAACCCTAATAGGCTCCGGCTCCGAGCCTTCACCGGTAAGCATGGCTTCATTTCACTCGCAGCAGCAAAGCTTCGATGTAATGCTTGGATAGATAATTCTATCAACACATTCATTACGAGGGCATTGTCTTCGTCTTCTGGAGATGATGACTTCTCAGAATTGGGATCCCCTGTGCCTAAAGCGGCAACTAGTCTTCCGAAGTTGATGACGGAGAAGCCTGAGCCTTATAATAAGAAAGCTAACCGTAGGAGAAAACTGTCTGGAGTGCCGTTAGAAAGCAGCACCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGTTGCTTGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTCGATCCTACAATTAGTCCACTAGTTGGCAAAGAGGCAGTTAGCATTAGGATTACCAACATCAACTCAGAGACCACTGATTCTGCAATACATTCTATGTGTACGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACAAAAGAGGATGCAGTGGATGCCTTCTTTAGCGTTGAAGACAATGCTGACATAGACAGCATAGTTGCAAAGTTGAATGATACAGTCATGCATGACCAAAAGTGGTCAGCTAATTTACATCAAAGAGACTCCACTCCTGCTGTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTGCATATAAGCCGTCAGTTGGCTGAAGTGAGAAGGCAAGTCACCACGAAGACCATGTGCATAGAAGATTTGGAGTATCTGCATAATGCCTTGGTGCACCTTGAAGCTCATTCTTGCAGCAGGACTAGTATTTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

30.62

Weight (kDa)

6.71

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	401
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	3 cut(s)	165, 178, 374
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	401, 709
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	5 cut(s)	7, 298, 548, 586, 794
AhlI	ACTAGT	3 cut(s)	194, 397, 815
AluBI	AGCT	5 cut(s)	76, 245, 294, 620, 797
AluI	AGCT	5 cut(s)	76, 245, 294, 620, 797
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	3 cut(s)	334, 440, 630
Alw44I	GTGCAC	1 cut(s)	785
AlwI	GGATC	3 cut(s)	165, 178, 374
ApaLI	GTGCAC	1 cut(s)	785
ApeKI	GCWGC	4 cut(s)	65, 68, 285, 807
AsiGI	ACCGGT	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	28, 724
BaeGI	GKGCMC	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	5 cut(s)	126, 132, 191, 555, 746
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	77, 80, 297, 819
BceAI	ACGGC	2 cut(s)	259, 687
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BcoDI	GTCTC	3 cut(s)	334, 440, 630
BcuI	ACTAGT	3 cut(s)	194, 397, 815
BfaI	CTAG	3 cut(s)	195, 398, 816
BisI	GCNGC	5 cut(s)	66, 69, 189, 286, 808
BlsI	GCNGC	5 cut(s)	67, 70, 190, 287, 809
BmiI	GGNNCC	3 cut(s)	20, 26, 172
BmsI	GCATC	2 cut(s)	511, 520
BpiI	GAAGAC	5 cut(s)	126, 132, 191, 555, 746
BpmI	CTGGAG	3 cut(s)	165, 288, 338
Bpu10I	CCTNAGC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	334, 440
BsaJI	CCNNGG	2 cut(s)	780, 825
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 709
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	780, 825
BseGI	GGATG	3 cut(s)	526, 535, 835
BseLI	CCNNNNNNNGG	2 cut(s)	401, 709
BseMII	CTCAG	3 cut(s)	174, 216, 456
BseNI	ACTGG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	4 cut(s)	77, 80, 297, 819
BshTI	ACCGGT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	22, 39
BslI	CCNNNNNNNGG	2 cut(s)	401, 709
BsmAI	GTCTC	3 cut(s)	334, 440, 630
Bso31I	GGTCTC	2 cut(s)	334, 440
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	170, 379
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	173, 217, 455
BspLI	GGNNCC	3 cut(s)	20, 26, 172
BspPI	GGATC	3 cut(s)	165, 178, 374
BspTNI	GGTCTC	2 cut(s)	334, 440
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	780, 825
BssMI	GATC	2 cut(s)	170, 379
BssT1I	CCWWGG	2 cut(s)	780, 825
Bst4CI	ACNGT	3 cut(s)	251, 264, 595
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	3 cut(s)	160, 225, 442
BstF5I	GGATG	3 cut(s)	526, 535, 835
BstKTI	GATC	2 cut(s)	173, 382
BstMAI	GTCTC	3 cut(s)	334, 440, 630
BstMBI	GATC	2 cut(s)	170, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 530
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	77, 80, 297, 819
BstV2I	GAAGAC	5 cut(s)	126, 132, 191, 555, 746
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	526, 535, 835
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	450, 531
Cac8I	GCNNGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	477
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	4 cut(s)	47, 598, 602, 745
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	3 cut(s)	160, 225, 442
DpnI	GATC	2 cut(s)	172, 381
DpnII	GATC	2 cut(s)	170, 379
Eco130I	CCWWGG	2 cut(s)	780, 825
Eco31I	GGTCTC	2 cut(s)	334, 440
Eco57I	CTGAAG	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	780, 825
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	780, 825
FaeI	CATG	4 cut(s)	50, 601, 605, 748
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	46, 597, 601, 744
Fnu4HI	GCNGC	5 cut(s)	66, 69, 189, 286, 808
FokI	GGATG	2 cut(s)	533, 542
Fsp4HI	GCNGC	5 cut(s)	66, 69, 189, 286, 808
FspBI	CTAG	3 cut(s)	195, 398, 816
GluI	GCNGC	5 cut(s)	66, 69, 189, 286, 808
GsuI	CTGGAG	3 cut(s)	165, 288, 338
HapII	CCGG	2 cut(s)	22, 39
Hin1II	CATG	4 cut(s)	50, 601, 605, 748
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	305, 455, 638
HpaII	CCGG	2 cut(s)	22, 39
HphI	GGTGA	2 cut(s)	28, 724
Hpy166II	GTNNAC	3 cut(s)	395, 477, 787
Hpy188I	TCNGA	4 cut(s)	29, 163, 204, 445
Hpy188III	TCNNGA	2 cut(s)	144, 267
Hpy8I	GTNNAC	3 cut(s)	395, 477, 787
HpyAV	CCTTC	3 cut(s)	43, 544, 717
HpyCH4III	ACNGT	3 cut(s)	251, 264, 595
HpyCH4IV	ACGT	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 530
HpyF3I	CTNAG	3 cut(s)	160, 225, 442
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	50, 601, 605, 748
Kzo9I	GATC	2 cut(s)	170, 379
LmnI	GCTCC	2 cut(s)	24, 30
Lsp1109I	GCAGC	4 cut(s)	77, 80, 297, 819
LweI	GCATC	2 cut(s)	511, 520
MaeI	CTAG	3 cut(s)	195, 398, 816
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	674, 730
MalI	GATC	2 cut(s)	172, 381
MboI	GATC	2 cut(s)	170, 379
MboII	GAAGA	6 cut(s)	126, 132, 191, 560, 751, 767
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	5 cut(s)	100, 164, 370, 387, 622
MlyI	GAGTC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	117, 319, 352, 403, 490, 511
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	1 cut(s)	681
MspI	CCGG	2 cut(s)	22, 39
MwoI	GCNNNNNNNGC	2 cut(s)	291, 530
NdeII	GATC	2 cut(s)	170, 379
NlaIII	CATG	4 cut(s)	50, 601, 605, 748
NlaIV	GGNNCC	3 cut(s)	20, 26, 172
NmuCI	GTSAC	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	305, 455
PflMI	CCANNNNNTGG	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	5 cut(s)	67, 70, 190, 287, 809
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	20, 26, 172
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	5 cut(s)	66, 69, 189, 286, 808
Sau3AI	GATC	2 cut(s)	170, 379
SchI	GAGTC	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	789
SetI	ASST	9 cut(s)	78, 247, 296, 346, 363, 482, 622, 792, 799
SfaNI	GCATC	2 cut(s)	511, 520
SpeI	ACTAGT	3 cut(s)	194, 397, 815
Sse9I	AATT	5 cut(s)	100, 164, 370, 387, 622
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	3 cut(s)	195, 398, 816
StyI	CCWWGG	2 cut(s)	780, 825
TaaI	ACNGT	3 cut(s)	251, 264, 595
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	79, 378
TasI	AATT	5 cut(s)	100, 164, 370, 387, 622
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	305, 455
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	457, 531
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	65, 68, 285, 807
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	2 cut(s)	43, 106
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	457, 531
Van91I	CCANNNNNTGG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	785
XspI	CTAG	3 cut(s)	195, 398, 816
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.