RchiOBHm_Chr7g0241871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005649
Physical Location & Seq
Forward (+)
67876593 .. 67879062
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21676

Sequence Viewer

Length: 906 bp
ATGGCCCGTTACTATTTTGCTATAATCGATCGACGGCGTCCCATTTCCTCGTTGACACTTTGGCGCGGTTTGGGGATGTTGAACCCTAATAGGCTCCGGCTCCGAGCCTTCACCGGTAAACATGGCTTCATTTCACTGGCAGCGGCAAAGCTTCGATGTAGTGCTTGGATAGATAATTCTATCAACACATTCATTACAAGGGCATTGTCTTCGTCTTCTGGAGATGATGACTTCTCAGAATTGGGATCCCCTTTGCCTAAAGCTGCAACTAGTCTTCCGAAGTTGATGACGGAGAAACCTGAGCCTTATAATAAGAAAGCTAACCGTAGGAGAAAACCTTCTGGAGTGCCGTTAGAAAGCAGCACCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGAAGCAAGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTTGATCCTAGTCCACTAGTTGACAAAGAGGCAGTTAGCATTAGGATTGCCAACATCAACTCAGAGACCACTGATTCTGCGATACATTCTATGTGTACGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACAAAAGAGGATGCAGTGGATGCCTTCTTTAGCGTTGAGGACAATGCTGACATAGACAGCATAGTTGCAAAGTTGAATGATACAGTCATGAATGACCATGAGTGGTCAGCTAAATTACATCATAGAGACTCCACTCCTGCTGTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTACATTTAAGCCGTCAGTTGGCTGAAGTGAAAAGGCAAGTCATCATGAAGACCGTGTGCATAGAAGATTTGGAGTATCTGCATAATGCCTTGGTGCACCTTGAAGCTCATTCTTGCAGCAGGACTAGTATTTCCAAGGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.4

Weight (kDa)

7.11

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 66, 143
AclWI GGATC 3 cut(s) 240, 253, 449
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 1 cut(s) 778
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 82, 373, 655, 863
AhlI ACTAGT 3 cut(s) 269, 466, 884
AluBI AGCT 6 cut(s) 151, 263, 320, 369, 689, 866
AluI AGCT 6 cut(s) 151, 263, 320, 369, 689, 866
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 3 cut(s) 409, 509, 699
Alw44I GTGCAC 1 cut(s) 854
AlwI GGATC 3 cut(s) 240, 253, 449
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 854
ApeKI GCWGC 4 cut(s) 140, 263, 360, 876
AsiGI ACCGGT 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 858
BamHI GGATCC 1 cut(s) 245
BbsI GAAGAC 4 cut(s) 201, 207, 266, 815
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 4 cut(s) 152, 250, 372, 888
BceAI ACGGC 3 cut(s) 50, 334, 756
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BcoDI GTCTC 3 cut(s) 409, 509, 699
BcuI ACTAGT 3 cut(s) 269, 466, 884
BfaI CTAG 4 cut(s) 270, 459, 467, 885
BisI GCNGC 5 cut(s) 141, 144, 264, 361, 877
BlsI GCNGC 5 cut(s) 142, 145, 265, 362, 878
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 95, 101, 247
BmsI GCATC 2 cut(s) 580, 589
BpiI GAAGAC 4 cut(s) 201, 207, 266, 815
BpmI CTGGAG 3 cut(s) 240, 363, 413
Bpu10I CCTNAGC 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 2 cut(s) 409, 509
BsaJI CCNNGG 2 cut(s) 849, 894
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 141, 396
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 849, 894
BseGI GGATG 4 cut(s) 81, 595, 604, 904
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMII CTCAG 3 cut(s) 249, 291, 525
BseNI ACTGG 2 cut(s) 141, 396
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 4 cut(s) 152, 250, 372, 888
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 2 cut(s) 97, 114
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 3 cut(s) 409, 509, 699
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 409, 509
Bsp1286I GDGCHC 1 cut(s) 858
Bsp143I GATC 3 cut(s) 28, 245, 454
BspACI CCGC 2 cut(s) 66, 143
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 248, 292, 524
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 666, 804
BspLI GGNNCC 3 cut(s) 95, 101, 247
BspPI GGATC 3 cut(s) 240, 253, 449
BspTNI GGTCTC 2 cut(s) 409, 509
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 141, 396
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 849, 894
BssMI GATC 3 cut(s) 28, 245, 454
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 849, 894
Bst4CI ACNGT 3 cut(s) 326, 664, 814
BstACI GRCGYC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 235, 300, 511
BstF5I GGATG 4 cut(s) 81, 595, 604, 904
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 31, 248, 457
BstMAI GTCTC 3 cut(s) 409, 509, 699
BstMBI GATC 3 cut(s) 28, 245, 454
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 366, 599
BstSLI GKGCMC 1 cut(s) 858
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 152, 250, 372, 888
BstV2I GAAGAC 4 cut(s) 201, 207, 266, 815
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 4 cut(s) 81, 595, 604, 904
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 134, 519, 600
Cac8I GCNNGC 1 cut(s) 409
CciI TCATGA 2 cut(s) 666, 804
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 546
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 4 cut(s) 122, 667, 677, 805
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 3 cut(s) 235, 300, 511
DpnI GATC 3 cut(s) 30, 247, 456
DpnII GATC 3 cut(s) 28, 245, 454
Eco130I CCWWGG 2 cut(s) 849, 894
Eco31I GGTCTC 2 cut(s) 409, 509
Eco57I CTGAAG 1 cut(s) 804
EcoT14I CCWWGG 2 cut(s) 849, 894
ErhI CCWWGG 2 cut(s) 849, 894
FaeI CATG 4 cut(s) 125, 670, 680, 808
FaqI GGGAC 1 cut(s) 24
FatI CATG 4 cut(s) 121, 666, 676, 804
Fnu4HI GCNGC 5 cut(s) 141, 144, 264, 361, 877
FokI GGATG 3 cut(s) 88, 602, 611
Fsp4HI GCNGC 5 cut(s) 141, 144, 264, 361, 877
FspBI CTAG 4 cut(s) 270, 459, 467, 885
GlaI GCGC 1 cut(s) 65
GluI GCNGC 5 cut(s) 141, 144, 264, 361, 877
GsuI CTGGAG 3 cut(s) 240, 363, 413
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 97, 114
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 4 cut(s) 125, 670, 680, 808
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 2 cut(s) 54, 472
HindII GTYRAC 2 cut(s) 54, 472
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 380, 524, 707
HpaII CCGG 2 cut(s) 97, 114
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 6 cut(s) 54, 119, 464, 472, 546, 856
Hpy188I TCNGA 4 cut(s) 104, 238, 279, 514
Hpy188III TCNNGA 4 cut(s) 219, 342, 667, 805
Hpy8I GTNNAC 6 cut(s) 54, 119, 464, 472, 546, 856
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 3 cut(s) 118, 348, 613
HpyCH4III ACNGT 3 cut(s) 326, 664, 814
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 7 cut(s) 266, 593, 647, 819, 841, 856, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 599
HpyF3I CTNAG 3 cut(s) 235, 300, 511
HpySE526I ACGT 1 cut(s) 548
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 4 cut(s) 125, 670, 680, 808
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 3 cut(s) 28, 245, 454
LmnI GCTCC 2 cut(s) 99, 105
Lsp1109I GCAGC 4 cut(s) 152, 250, 372, 888
LweI GCATC 2 cut(s) 580, 589
MaeI CTAG 4 cut(s) 270, 459, 467, 885
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 8, 743
MalI GATC 3 cut(s) 30, 247, 456
MboI GATC 3 cut(s) 28, 245, 454
MboII GAAGA 5 cut(s) 201, 207, 266, 820, 836
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 4 cut(s) 175, 239, 445, 692
MlyI GAGTC 1 cut(s) 701
MnlI CCTC 7 cut(s) 58, 394, 427, 472, 559, 580, 610
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 2 cut(s) 750, 767
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 97, 114
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 366, 599
NdeII GATC 3 cut(s) 28, 245, 454
NlaIII CATG 4 cut(s) 125, 670, 680, 808
NlaIV GGNNCC 3 cut(s) 95, 101, 247
PagI TCATGA 2 cut(s) 666, 804
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 380, 524
PflFI GACNNNGTC 1 cut(s) 36
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 5 cut(s) 142, 145, 265, 362, 878
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 95, 101, 247
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 36
PvuI CGATCG 1 cut(s) 31
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 750, 767
SatI GCNGC 5 cut(s) 141, 144, 264, 361, 877
Sau3AI GATC 3 cut(s) 28, 245, 454
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 701
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 2 cut(s) 580, 589
SpeI ACTAGT 3 cut(s) 269, 466, 884
Sse9I AATT 4 cut(s) 175, 239, 445, 692
SsiI CCGC 2 cut(s) 66, 143
SspMI CTAG 4 cut(s) 270, 459, 467, 885
StyI CCWWGG 2 cut(s) 849, 894
TaaI ACNGT 3 cut(s) 326, 664, 814
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 27, 31, 154
TasI AATT 4 cut(s) 175, 239, 445, 692
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 380, 524
Tru1I TTAA 2 cut(s) 750, 767
Tru9I TTAA 2 cut(s) 750, 767
TscAI CASTG 3 cut(s) 141, 526, 600
TseI GCWGC 4 cut(s) 140, 263, 360, 876
TspDTI ATGAA 4 cut(s) 118, 181, 683, 821
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 141, 526, 600
Tth111I GACNNNGTC 1 cut(s) 36
VneI GTGCAC 1 cut(s) 854
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 4 cut(s) 270, 459, 467, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.