Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

55814771 .. 55816948

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG473700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCCGTTACTATTTTGCTATAATCGACCGACGGCGTCCCATTTCCTCGTTGACACTTTGGCGCGGTTTGGGGATGTTGAACCCTAATAGGCTCCGGCTCCGAGCCTTCACCGGTAAACATGGCTTCATTTCACTGGCAGCGGCAAAGCTTCGATGTAGTGCTTGGATAGATAATTCTATCAACACATTCATTACAAGGGCATTGTCTTCGTCTTCTGGAGATGATGACTTCTCAGAATTGGGATCCCCTGTGCCTAAAGCTGCAACTAGTCTTCCGAAGTTGATGACGGAGAAACCTGAGCCTTATAATAAGAAAGCTAACCGTAGGAGAAAACCGTCTGGAGTGCCGTTAGAAAGCAGCACCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGAAGCAAGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTCGATCCTACAATTAGTCCACTAGTTGACAAAGAGGCAGTTAGCATTAGGATTGCCAACATCAACTCAGAGACCACTGATTCTGCGATACATTCTATGTGTACGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACAAAAGAGGATGCAGTGGATGCCTTCTTTAGCGTTGAGGACAATGCTGACATAGACAGCATAGTTGCAAAGTTGAATGATACAGTCATGAATGACCATAAGTGGTCAGCTAAATTACATCATAGAGACTCCACTCCTGCTGTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTACATGTAAGCCGTCAGTTGGCTGAAGTGAGAAGGCAAGTTACCATGAAGACCGTGTGCATAGAAGATTTGGAGTATCTGCATAATGCCTTGGTGCACCTTGAAGCTCATTCTTGCAGCAGGACTAGTATTTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.6

Weight (kDa)

8.17

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 143
AclWI	GGATC	3 cut(s)	240, 253, 449
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	784
AflIII	ACRYGT	1 cut(s)	769
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	82, 373, 661, 869
AhlI	ACTAGT	3 cut(s)	269, 472, 890
AluBI	AGCT	6 cut(s)	151, 263, 320, 369, 695, 872
AluI	AGCT	6 cut(s)	151, 263, 320, 369, 695, 872
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	3 cut(s)	409, 515, 705
Alw44I	GTGCAC	1 cut(s)	860
AlwI	GGATC	3 cut(s)	240, 253, 449
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	860
ApeKI	GCWGC	4 cut(s)	140, 263, 360, 882
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	790, 822
BbsI	GAAGAC	4 cut(s)	201, 207, 266, 821
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	4 cut(s)	152, 250, 372, 894
BceAI	ACGGC	3 cut(s)	50, 334, 762
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BcoDI	GTCTC	3 cut(s)	409, 515, 705
BcuI	ACTAGT	3 cut(s)	269, 472, 890
BfaI	CTAG	3 cut(s)	270, 473, 891
BisI	GCNGC	5 cut(s)	141, 144, 264, 361, 883
BlsI	GCNGC	5 cut(s)	142, 145, 265, 362, 884
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	95, 101, 247
BmsI	GCATC	2 cut(s)	586, 595
BpiI	GAAGAC	4 cut(s)	201, 207, 266, 821
BpmI	CTGGAG	3 cut(s)	240, 363, 413
Bpu10I	CCTNAGC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	2 cut(s)	409, 515
BsaJI	CCNNGG	2 cut(s)	855, 900
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	141, 396
BseDI	CCNNGG	2 cut(s)	855, 900
BseGI	GGATG	4 cut(s)	81, 601, 610, 910
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMII	CTCAG	3 cut(s)	249, 291, 531
BseNI	ACTGG	2 cut(s)	141, 396
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	4 cut(s)	152, 250, 372, 894
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	864
BsiSI	CCGG	2 cut(s)	97, 114
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	3 cut(s)	409, 515, 705
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	409, 515
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	2 cut(s)	245, 454
BspACI	CCGC	2 cut(s)	66, 143
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	248, 292, 530
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	95, 101, 247
BspPI	GGATC	3 cut(s)	240, 253, 449
BspTNI	GGTCTC	2 cut(s)	409, 515
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	141, 396
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	855, 900
BssMI	GATC	2 cut(s)	245, 454
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	855, 900
Bst4CI	ACNGT	4 cut(s)	326, 339, 670, 820
BstACI	GRCGYC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	235, 300, 517
BstF5I	GGATG	4 cut(s)	81, 601, 610, 910
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	248, 457
BstMAI	GTCTC	3 cut(s)	409, 515, 705
BstMBI	GATC	2 cut(s)	245, 454
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 605
BstNSI	RCATGY	1 cut(s)	773
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	152, 250, 372, 894
BstV2I	GAAGAC	4 cut(s)	201, 207, 266, 821
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	81, 601, 610, 910
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	134, 525, 606
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	552
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	4 cut(s)	122, 673, 770, 811
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	235, 300, 517
DpnI	GATC	2 cut(s)	247, 456
DpnII	GATC	2 cut(s)	245, 454
Eco130I	CCWWGG	2 cut(s)	855, 900
Eco31I	GGTCTC	2 cut(s)	409, 515
Eco57I	CTGAAG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	855, 900
ErhI	CCWWGG	2 cut(s)	855, 900
FaeI	CATG	4 cut(s)	125, 676, 773, 814
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	121, 672, 769, 810
Fnu4HI	GCNGC	5 cut(s)	141, 144, 264, 361, 883
FokI	GGATG	3 cut(s)	88, 608, 617
Fsp4HI	GCNGC	5 cut(s)	141, 144, 264, 361, 883
FspBI	CTAG	3 cut(s)	270, 473, 891
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	5 cut(s)	141, 144, 264, 361, 883
GsuI	CTGGAG	3 cut(s)	240, 363, 413
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	97, 114
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	125, 676, 773, 814
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	54, 478
HindII	GTYRAC	2 cut(s)	54, 478
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	3 cut(s)	380, 530, 713
HpaII	CCGG	2 cut(s)	97, 114
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	6 cut(s)	54, 119, 470, 478, 552, 862
Hpy188I	TCNGA	4 cut(s)	104, 238, 279, 520
Hpy188III	TCNNGA	3 cut(s)	219, 342, 673
Hpy8I	GTNNAC	6 cut(s)	54, 119, 470, 478, 552, 862
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	118, 619, 792
HpyCH4III	ACNGT	4 cut(s)	326, 339, 670, 820
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	7 cut(s)	266, 599, 653, 825, 847, 862, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 605
HpyF3I	CTNAG	3 cut(s)	235, 300, 517
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	4 cut(s)	125, 676, 773, 814
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	245, 454
LmnI	GCTCC	2 cut(s)	99, 105
Lsp1109I	GCAGC	4 cut(s)	152, 250, 372, 894
LweI	GCATC	2 cut(s)	586, 595
MaeI	CTAG	3 cut(s)	270, 473, 891
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	8, 749, 805
MalI	GATC	2 cut(s)	247, 456
MboI	GATC	2 cut(s)	245, 454
MboII	GAAGA	5 cut(s)	201, 207, 266, 826, 842
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	5 cut(s)	175, 239, 445, 462, 698
MlyI	GAGTC	1 cut(s)	707
MnlI	CCTC	7 cut(s)	58, 394, 427, 478, 565, 586, 616
MseI	TTAA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	97, 114
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	366, 605
NdeII	GATC	2 cut(s)	245, 454
NlaIII	CATG	4 cut(s)	125, 676, 773, 814
NlaIV	GGNNCC	3 cut(s)	95, 101, 247
NspI	RCATGY	1 cut(s)	773
PagI	TCATGA	1 cut(s)	672
PciI	ACATGT	1 cut(s)	769
PfeI	GAWTC	2 cut(s)	380, 530
PflFI	GACNNNGTC	1 cut(s)	36
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	142, 145, 265, 362, 884
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PscI	ACATGT	1 cut(s)	769
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	95, 101, 247
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	5 cut(s)	141, 144, 264, 361, 883
Sau3AI	GATC	2 cut(s)	245, 454
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	586, 595
SpeI	ACTAGT	3 cut(s)	269, 472, 890
Sse9I	AATT	5 cut(s)	175, 239, 445, 462, 698
SsiI	CCGC	2 cut(s)	66, 143
SspMI	CTAG	3 cut(s)	270, 473, 891
StyI	CCWWGG	2 cut(s)	855, 900
TaaI	ACNGT	4 cut(s)	326, 339, 670, 820
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	27, 154, 453
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	175, 239, 445, 462, 698
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	380, 530
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	3 cut(s)	141, 532, 606
TseI	GCWGC	4 cut(s)	140, 263, 360, 882
TspDTI	ATGAA	4 cut(s)	118, 181, 689, 827
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	3 cut(s)	141, 532, 606
Tth111I	GACNNNGTC	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	860
XceI	RCATGY	1 cut(s)	773
XspI	CTAG	3 cut(s)	270, 473, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.