Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Reverse (-)

1710764 .. 1712869

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTGAACCCTAATAGGCTCCGGCCCCGAGCCTTCACCGGTAAACATGGCTTCATTTCACTCTCAGCAGCAAAGCTTCGATGTAGTGCTTGGATAGATAATTCTATCAACACATTCATTACAAGGGCATTGTCTTCGTCTTCTGGAGATGATGACTTCTCAGAATTGGGATCCCCTGTGCCTAAAGCTGCAACTAGTCTTCCGAAGTTGATGACGGAGAAACCTGAGCCTTATAATAAGAAAGCTAACCGTAGGAGAAAACGGTCTGGAGTGCCGTTAGAAAGCAGCGCCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGAAGCAAGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTCGATCCTACAATTAGTCCACTAGTTGACAAAGAGGCAGTTAGCATTAGGATTACCAACATCAACTCAGAGACCACTGATTCTGCGATACATTCTATGTGTATGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACAAAAGAGGATGCAGTGGATGCCTTCTTTAGTGTTGAGGACAATGCTGACAGAGACAGCATAATTGCACAGTTGAATGATACAGTCATGAATGACCATAAGTGGTCAGCTAATTTACATCATAGAGACTCCACTCCTCCTGTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTGCATATAAGCCGTCAGTTGGCTGAAGTGAGAAGGCAAGTCACCATGAAGACCATGTGCATAGAAGATTTGGAGTATCTGCATAATGCCATGGTGCACCTTGAAGCTCATTCTTGCAGCAGGACTAGTATTTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.83

Weight (kDa)

6.51

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AclWI	GGATC	3 cut(s)	165, 178, 374
AcuI	CTGAAG	1 cut(s)	735
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	7, 298, 586, 794
AhlI	ACTAGT	3 cut(s)	194, 397, 815
AluBI	AGCT	6 cut(s)	76, 188, 245, 294, 620, 797
AluI	AGCT	6 cut(s)	76, 188, 245, 294, 620, 797
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	4 cut(s)	334, 440, 558, 630
Alw44I	GTGCAC	1 cut(s)	785
AlwI	GGATC	3 cut(s)	165, 178, 374
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	23
ApaLI	GTGCAC	1 cut(s)	785
ApeKI	GCWGC	4 cut(s)	68, 188, 285, 807
AsiGI	ACCGGT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	28, 724
AvaI	CYCGRG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	4 cut(s)	126, 132, 191, 746
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	80, 175, 297, 819
BceAI	ACGGC	2 cut(s)	259, 687
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BcoDI	GTCTC	4 cut(s)	334, 440, 558, 630
BcuI	ACTAGT	3 cut(s)	194, 397, 815
BfaI	CTAG	3 cut(s)	195, 398, 816
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	4 cut(s)	69, 189, 286, 808
BlsI	GCNGC	4 cut(s)	70, 190, 287, 809
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	3 cut(s)	20, 26, 172
BmsI	GCATC	2 cut(s)	511, 520
BpiI	GAAGAC	4 cut(s)	126, 132, 191, 746
BpmI	CTGGAG	3 cut(s)	165, 288, 338
Bpu10I	CCTNAGC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	334, 440
BsaJI	CCNNGG	2 cut(s)	780, 825
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	780, 825
BseGI	GGATG	3 cut(s)	526, 535, 835
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	4 cut(s)	78, 174, 216, 456
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	636
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	4 cut(s)	80, 175, 297, 819
BshFI	GGCC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	789
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	22, 39
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	4 cut(s)	334, 440, 558, 630
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	2 cut(s)	334, 440
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	170, 379
Bsp19I	CCATGG	1 cut(s)	780
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	4 cut(s)	77, 173, 217, 455
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	20, 26, 172
BspPI	GGATC	3 cut(s)	165, 178, 374
BspTNI	GGTCTC	2 cut(s)	334, 440
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	780, 825
BssMI	GATC	2 cut(s)	170, 379
BssT1I	CCWWGG	2 cut(s)	780, 825
Bst4CI	ACNGT	4 cut(s)	251, 264, 582, 595
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	292, 334
BstDEI	CTNAG	4 cut(s)	64, 160, 225, 442
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	3 cut(s)	526, 535, 835
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	173, 382
BstMAI	GTCTC	4 cut(s)	334, 440, 558, 630
BstMBI	GATC	2 cut(s)	170, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 530
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	80, 175, 297, 819
BstV2I	GAAGAC	4 cut(s)	126, 132, 191, 746
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	3 cut(s)	526, 535, 835
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	450, 531
Cac8I	GCNNGC	2 cut(s)	292, 334
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	5 cut(s)	47, 598, 736, 745, 781
DdeI	CTNAG	4 cut(s)	64, 160, 225, 442
DpnI	GATC	2 cut(s)	172, 381
DpnII	GATC	2 cut(s)	170, 379
Eco130I	CCWWGG	2 cut(s)	780, 825
Eco31I	GGTCTC	2 cut(s)	334, 440
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	780, 825
ErhI	CCWWGG	2 cut(s)	780, 825
FaeI	CATG	5 cut(s)	50, 601, 739, 748, 784
FatI	CATG	5 cut(s)	46, 597, 735, 744, 780
Fnu4HI	GCNGC	4 cut(s)	69, 189, 286, 808
FokI	GGATG	2 cut(s)	533, 542
Fsp4HI	GCNGC	4 cut(s)	69, 189, 286, 808
FspBI	CTAG	3 cut(s)	195, 398, 816
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	4 cut(s)	69, 189, 286, 808
GsuI	CTGGAG	3 cut(s)	165, 288, 338
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	22, 39
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	5 cut(s)	50, 601, 739, 748, 784
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	305, 455, 638
HpaII	CCGG	2 cut(s)	22, 39
HphI	GGTGA	2 cut(s)	28, 724
Hpy166II	GTNNAC	4 cut(s)	44, 395, 403, 787
Hpy188I	TCNGA	3 cut(s)	163, 204, 445
Hpy188III	TCNNGA	3 cut(s)	144, 267, 598
Hpy8I	GTNNAC	4 cut(s)	44, 395, 403, 787
HpyAV	CCTTC	3 cut(s)	43, 544, 717
HpyCH4III	ACNGT	4 cut(s)	251, 264, 582, 595
HpyCH4V	TGCA	8 cut(s)	191, 524, 578, 694, 750, 772, 787, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 530
HpyF3I	CTNAG	4 cut(s)	64, 160, 225, 442
Hsp92II	CATG	5 cut(s)	50, 601, 739, 748, 784
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	170, 379
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	4 cut(s)	80, 175, 297, 819
LweI	GCATC	2 cut(s)	511, 520
MaeI	CTAG	3 cut(s)	195, 398, 816
MaeIII	GTNAC	2 cut(s)	674, 730
MalI	GATC	2 cut(s)	172, 381
MboI	GATC	2 cut(s)	170, 379
MboII	GAAGA	5 cut(s)	126, 132, 191, 751, 767
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	6 cut(s)	100, 164, 370, 387, 573, 622
MlyI	GAGTC	1 cut(s)	632
MnlI	CCTC	7 cut(s)	319, 352, 403, 490, 511, 541, 657
MseI	TTAA	1 cut(s)	681
MspI	CCGG	2 cut(s)	22, 39
MwoI	GCNNNNNNNGC	2 cut(s)	291, 530
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	2 cut(s)	170, 379
NlaIII	CATG	5 cut(s)	50, 601, 739, 748, 784
NlaIV	GGNNCC	3 cut(s)	20, 26, 172
NmuCI	GTSAC	1 cut(s)	730
PagI	TCATGA	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	305, 455
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	70, 190, 287, 809
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	20, 26, 172
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	69, 189, 286, 808
Sau3AI	GATC	2 cut(s)	170, 379
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	2 cut(s)	511, 520
SpeI	ACTAGT	3 cut(s)	194, 397, 815
Sse9I	AATT	6 cut(s)	100, 164, 370, 387, 573, 622
SspMI	CTAG	3 cut(s)	195, 398, 816
StyI	CCWWGG	2 cut(s)	780, 825
TaaI	ACNGT	4 cut(s)	251, 264, 582, 595
TaqI	TCGA	2 cut(s)	79, 378
TasI	AATT	6 cut(s)	100, 164, 370, 387, 573, 622
TfiI	GAWTC	2 cut(s)	305, 455
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	457, 531
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	68, 188, 285, 807
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	4 cut(s)	43, 106, 614, 752
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	457, 531
VneI	GTGCAC	1 cut(s)	785
XspI	CTAG	3 cut(s)	195, 398, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.