Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Reverse (-)

22417888 .. 22420616

Gene Structure 2729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTGAAGTTGAAATATATTGGCCTCCGAGCCTTCACTATCATTGGTGAACAACATAGCTTCATTTCATCCGCAATCAAGCTCAGATGCAATGCCAGGATAGATAACCCATTATCCGCGAGGGCTTTGTCTTGCATAACAACATTTCCCCGGTCCTTTAATTCTTCATCTTCCGAAGATGATGATTACTCAGCATTGGGCTCCCCAGTGCCTAAAGCTCCAAGTAATCCTAGGAAGTTGATGACAGAGAAGCCTGAGCCTAATAGGAAAACTAATCGTAAGAAAAAATCGTCTGGAAAGCCTTCAAAAAGCAGCATCAGCTCAAAAGATGTTTCCTCTGAACGGGAATCAAGCAGGAGAGCAAGTTTGGATCTTGAGGTTAATACAAAAGGCTTTGATCTTCCAATTCATCCACCAGATGACCAAGAGGAAGTTACCATTAGAATTACCAACATAAACTCGGAGACAAGTGATTCTGCAGTACACTCAATGTGCAAGTCCTGTGGTAGCTTGGAGGGGGTTGTGAGGACAAAAGCAGATGCAGTGGATGCGTTGTTTAGCGTGAAAGACAACATGGGCATACAAAGTTTAATTAGAAAGTTGAATCAGACGGTCGTGAATGATCACAAATGGTCAGCTAACTTGCATTCAAGAGACTCCGCCTCTGCAGTGACGAGCAAGCAAATCAATGCTAACTGCAATTTGGGACTGGATATAAGCCATCATCTGGGTGACCTAAGAAGCCAAATCAGTATGAAGACAGTGTGCATAGAAGACTTGGAGTATCTGCATAATGCCTTGTTGCATCTTGAGGCTCAACCTGACAGAAGCAGTAGTATTCCTAACAGCGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.29

Weight (kDa)

8.68

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	72, 117, 660
AclWI	GGATC	1 cut(s)	378
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	342, 727
AgsI	TTSAA	5 cut(s)	7, 13, 306, 604, 651
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	7 cut(s)	60, 82, 218, 321, 510, 638, 855
AluI	AGCT	7 cut(s)	60, 82, 218, 321, 510, 638, 855
Alw26I	GTCTC	2 cut(s)	458, 648
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	301
AspA2I	CCTAGG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	59, 743
AvaII	GGWCC	1 cut(s)	153
AvrII	CCTAGG	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	764, 780
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	729
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	458, 648
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	2 cut(s)	477, 666
BisI	GCNGC	1 cut(s)	313
BlnI	CCTAGG	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	97, 151
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	97, 151
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	5 cut(s)	77, 324, 529, 538, 814
BmuI	ACTGGG	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	764, 780
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	395, 830
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	149, 230
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 727
Bse1I	ACTGG	2 cut(s)	206, 714
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	149, 230
BseGI	GGATG	3 cut(s)	68, 409, 553
BseLI	CCNNNNNNNGG	2 cut(s)	342, 727
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	97, 204, 246
BseNI	ACTGG	2 cut(s)	206, 714
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	2 cut(s)	342, 727
BsmAI	GTCTC	2 cut(s)	458, 648
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	370, 397, 622
BspACI	CCGC	3 cut(s)	72, 117, 660
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	3 cut(s)	96, 203, 247
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	2 cut(s)	481, 670
BspPI	GGATC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	206, 714
BssECI	CCNNGG	2 cut(s)	149, 230
BssMI	GATC	3 cut(s)	370, 397, 622
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	613, 763
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	4 cut(s)	83, 190, 255, 737
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	3 cut(s)	68, 409, 553
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	373, 400, 625
BstMAI	GTCTC	2 cut(s)	458, 648
BstMBI	GATC	3 cut(s)	370, 397, 622
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 548
BstNI	CCWGG	1 cut(s)	97
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	95, 149
BstSFI	CTRYAG	2 cut(s)	477, 666
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	2 cut(s)	764, 780
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	68, 409, 553
BtsI	GCAGTG	2 cut(s)	549, 675
BtsIMutI	CAGTG	4 cut(s)	213, 549, 675, 768
Cac8I	GCNNGC	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	482
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	1 cut(s)	574
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	4 cut(s)	83, 190, 255, 737
DpnI	GATC	3 cut(s)	372, 399, 624
DpnII	GATC	3 cut(s)	370, 397, 622
EciI	GGCGGA	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	731
EcoO65I	GGTNACC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	577
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	3 cut(s)	55, 396, 560
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	577
HinfI	GANTC	4 cut(s)	347, 473, 604, 656
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	59, 743
Hpy166II	GTNNAC	2 cut(s)	50, 484
Hpy188I	TCNGA	6 cut(s)	29, 86, 175, 340, 463, 609
Hpy188III	TCNNGA	5 cut(s)	294, 374, 616, 651, 809
Hpy8I	GTNNAC	2 cut(s)	50, 484
HpyAV	CCTTC	2 cut(s)	43, 312
HpyCH4III	ACNGT	2 cut(s)	613, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 548
HpyF3I	CTNAG	4 cut(s)	83, 190, 255, 737
Hsp92II	CATG	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	370, 397, 622
LmnI	GCTCC	2 cut(s)	206, 223
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	5 cut(s)	77, 324, 529, 538, 814
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	433, 670, 731
MalI	GATC	3 cut(s)	372, 399, 624
MboI	GATC	3 cut(s)	370, 397, 622
MboII	GAAGA	6 cut(s)	156, 162, 188, 392, 769, 785
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	160, 405, 444, 591, 700
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	9 cut(s)	35, 114, 346, 370, 421, 508, 519, 673, 805
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	3 cut(s)	159, 381, 590
MslI	CAYNNNNRTG	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	855
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	97, 151
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	318, 548
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	370, 397, 622
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	670, 731
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	347, 473, 604
PflMI	CCANNNNNTGG	1 cut(s)	727
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	95
PspEI	GGTNACC	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	2 cut(s)	481, 670
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	855
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	729
SaqAI	TTAA	3 cut(s)	159, 381, 590
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	370, 397, 622
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	97, 151
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	5 cut(s)	77, 324, 529, 538, 814
SfcI	CTRYAG	2 cut(s)	477, 666
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	374, 809
SmoI	CTYRAG	2 cut(s)	374, 809
Sse9I	AATT	5 cut(s)	160, 405, 444, 591, 700
SsiI	CCGC	3 cut(s)	72, 117, 660
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	95, 149
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	613, 763
TasI	AATT	5 cut(s)	160, 405, 444, 591, 700
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	3 cut(s)	347, 473, 604
Tru1I	TTAA	3 cut(s)	159, 381, 590
Tru9I	TTAA	3 cut(s)	159, 381, 590
TscAI	CASTG	4 cut(s)	213, 549, 675, 768
TseFI	GTSAC	2 cut(s)	670, 731
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	2 cut(s)	670, 731
TspDTI	ATGAA	5 cut(s)	52, 57, 156, 398, 770
TspRI	CASTG	4 cut(s)	213, 549, 675, 768
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.