Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

42866590 .. 42869128

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1316900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTGAGGTTGAAGCCAAATCGCATCGGAACCTTCACTACCACTGGCGAAGAGCTCCTCGTTTCATTCGCAGCAAAGCTTCTTCGATGTCATGCCACCATAGATTTTTCTATCAACCCATTATCCGCGAGGAATAGGGCTTTATCTTGCATAACAACGTTCCCCCGGTCTTTTCATTCTTCAACTTCTGAAGATGACACCTTCTCCGAATTGGGCTCCCCAATGCCTAAAGCTCCAACTCATGCTCGGAAGTTGAAGTTGATGACGGAGAAGCCTGAGCCTTATTTGAAAACTAATCGTACGAAAAGACCTTCTCGAATGCCTTCAGAAAGCCGCATCAGATTGAAAGATAATTCCTCAAGACTGGGTTCGGATTGGGAGGTTGTTGTACGGAGTTTTGGTCGTTCAATTGATCCACCGGAGGAGGAAGAGGAAGTTACCATTAGAATTACCAATATAAATTCGGAGACAACAGACTCTGCAGTGCACTCAATGTGCACGTCTTGTGGTAGCTTAGAGGGGCTTGTGAGGACAAAAGAAGATGCAGTTGACGCCTTGTTTAGTGTGAAAGACAAGGCAGGCATAAAAAGCATAATCAAAAAATTGAATGAGACGATGGTGAACGGTCACAAGTGGTCAGCTGATTTACATGGAAGAGACTCCTCCGCTGAAGTGAGGAGCAAGCAAAGCAATGCTAACTATGATTTGAGATTGGAGATAAGCCGTCAACTGGCGGACGTAAGAAGGGAAGTCACAAGGAAGACGGTGTGCATACAAGACTTGGAGTGTCTGCATAACTCCTTGTTGCACCTTGAGGGGGAGGCTCATCCTCACACCACCCACACCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.84

Weight (kDa)

8.88

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 334, 666, 734, 847
AclI	AACGTT	1 cut(s)	158
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	3 cut(s)	210, 309, 690
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	2 cut(s)	301, 390
AfiI	CCNNNNNNNGG	2 cut(s)	730, 817
AgsI	TTSAA	7 cut(s)	13, 183, 256, 289, 346, 408, 607
AjiI	CACGTC	1 cut(s)	501
AluBI	AGCT	5 cut(s)	55, 79, 233, 513, 641
AluI	AGCT	5 cut(s)	55, 79, 233, 513, 641
Alw21I	GWGCWC	3 cut(s)	57, 489, 500
Alw26I	GTCTC	3 cut(s)	461, 605, 651
Alw44I	GTGCAC	2 cut(s)	485, 496
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	479
ApaLI	GTGCAC	2 cut(s)	485, 496
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	631
BaeGI	GKGCMC	2 cut(s)	489, 500
BanII	GRGCYC	2 cut(s)	57, 218
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	3 cut(s)	57, 489, 500
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	461, 605, 651
BfaI	CTAG	1 cut(s)	850
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	72, 334
BlsI	GCNGC	2 cut(s)	73, 335
Bme1390I	CCNGG	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	31, 217
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	33, 345, 532
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	2 cut(s)	343, 833
BpuMI	CCSGG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 817
Bse1I	ACTGG	3 cut(s)	49, 369, 735
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	2 cut(s)	730, 817
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	49, 369, 735
BseRI	GAGGAG	4 cut(s)	47, 437, 652, 691
BseSI	GKGCMC	2 cut(s)	489, 500
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	128
BsiHKAI	GWGCWC	3 cut(s)	57, 489, 500
BsiSI	CCGG	2 cut(s)	166, 419
BsiWI	CGTACG	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	730, 817
BsmAI	GTCTC	3 cut(s)	461, 605, 651
BsmBI	CGTCTC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	324
Bsp1286I	GDGCHC	4 cut(s)	57, 218, 489, 500
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	5 cut(s)	126, 334, 666, 734, 847
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	31, 217
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	49, 369, 735
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	626, 766
Bst6I	CTCTTC	3 cut(s)	45, 423, 649
BstACI	GRCGYC	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	580, 683
BstDEI	CTNAG	2 cut(s)	276, 514
BstF5I	GGATG	1 cut(s)	826
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	3 cut(s)	461, 605, 651
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 588, 687
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	2 cut(s)	489, 500
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	767
BtrI	CACGTC	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	42, 489
Cac8I	GCNNGC	2 cut(s)	580, 683
CaiI	CAGNNNCTG	1 cut(s)	479
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	300, 389
CviAII	CATG	3 cut(s)	92, 242, 650
CviQI	GTAC	2 cut(s)	300, 389
DdeI	CTNAG	2 cut(s)	276, 514
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eam1104I	CTCTTC	3 cut(s)	45, 423, 649
EarI	CTCTTC	3 cut(s)	45, 423, 649
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	57, 218
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	210, 309, 690
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	57, 218
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	3 cut(s)	95, 245, 653
FatI	CATG	3 cut(s)	91, 241, 649
Fnu4HI	GCNGC	2 cut(s)	72, 334
FokI	GGATG	1 cut(s)	813
FriOI	GRGCYC	2 cut(s)	57, 218
Fsp4HI	GCNGC	2 cut(s)	72, 334
FspBI	CTAG	1 cut(s)	850
GluI	GCNGC	2 cut(s)	72, 334
HapII	CCGG	2 cut(s)	166, 419
HgaI	GACGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	3 cut(s)	95, 245, 653
HincII	GTYRAC	2 cut(s)	550, 728
HindII	GTYRAC	2 cut(s)	550, 728
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	476, 659
HpaII	CCGG	2 cut(s)	166, 419
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	5 cut(s)	487, 498, 550, 622, 728
Hpy188I	TCNGA	8 cut(s)	29, 190, 208, 249, 328, 341, 373, 466
Hpy188III	TCNNGA	2 cut(s)	315, 360
Hpy8I	GTNNAC	5 cut(s)	487, 498, 550, 622, 728
HpyAV	CCTTC	5 cut(s)	43, 211, 321, 333, 738
HpyCH4III	ACNGT	2 cut(s)	626, 766
HpyCH4IV	ACGT	3 cut(s)	158, 500, 738
HpyCH4V	TGCA	8 cut(s)	150, 482, 487, 498, 545, 771, 793, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 588, 687
HpyF3I	CTNAG	2 cut(s)	276, 514
HpySE526I	ACGT	3 cut(s)	158, 500, 738
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	95, 245, 653
Kzo9I	GATC	1 cut(s)	412
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	60, 221, 238, 678
LpnPI	CCDG	7 cut(s)	30, 179, 288, 350, 432, 564, 716
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	3 cut(s)	33, 345, 532
MaeI	CTAG	1 cut(s)	850
MaeII	ACGT	3 cut(s)	158, 500, 738
MaeIII	GTNAC	3 cut(s)	436, 626, 751
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	8 cut(s)	62, 74, 171, 203, 440, 551, 666, 772
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	4 cut(s)	57, 218, 489, 500
MluCI	AATT	6 cut(s)	209, 352, 408, 447, 460, 602
MlyI	GAGTC	2 cut(s)	470, 653
MmeI	TCCRAC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	641, 668
MspI	CCGG	2 cut(s)	166, 419
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	324
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	551, 588, 687
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	95, 245, 653
NlaIV	GGNNCC	2 cut(s)	31, 217
NmuCI	GTSAC	2 cut(s)	626, 751
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	322
Pfl23II	CGTACG	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	73, 335
PleI	GAGTC	2 cut(s)	470, 653
PpsI	GAGTC	2 cut(s)	470, 653
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	158
PspLI	CGTACG	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	31, 217
PsrI	GAACNNNNNNTAC	2 cut(s)	22, 54
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	301, 390
RsaNI	GTAC	2 cut(s)	300, 389
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	2 cut(s)	72, 334
Sau3AI	GATC	1 cut(s)	412
SchI	GAGTC	2 cut(s)	470, 653
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	4 cut(s)	57, 218, 489, 500
SfaNI	GCATC	3 cut(s)	33, 345, 532
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	358, 812
SmoI	CTYRAG	2 cut(s)	358, 812
Sse9I	AATT	6 cut(s)	209, 352, 408, 447, 460, 602
SsiI	CCGC	5 cut(s)	126, 334, 666, 734, 847
SspMI	CTAG	1 cut(s)	850
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	626, 766
TaiI	ACGT	3 cut(s)	161, 503, 741
TaqI	TCGA	2 cut(s)	85, 316
TasI	AATT	6 cut(s)	209, 352, 408, 447, 460, 602
TauI	GCSGC	1 cut(s)	336
TscAI	CASTG	2 cut(s)	49, 489
TseFI	GTSAC	2 cut(s)	626, 751
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	626, 751
TspDTI	ATGAA	2 cut(s)	54, 164
TspGWI	ACGGA	2 cut(s)	281, 406
TspRI	CASTG	2 cut(s)	49, 489
VneI	GTGCAC	2 cut(s)	485, 496
XapI	RAATTY	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.