Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

29847406 .. 29850019

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCCTCCCTAAATCAGAATCCCAAGTTTAAGGAACTGGTCACCCGTTTAGCCTTTAGCGCGGCTGCTGGCGGTGGACGACACCACTGTTGGCTGCGGAGTGCGGAGGGAGTGGGAATGTTGAGGTTGAAGCCAAATCGCATCGGAGCCTTCACTACCACTGGTGAAGAGCTCTTCGTTTCATTCGCAGCAAAGCTTCTTCGATGTCATGCCACCATAGATTTTTCTTTCAACCCATTATCTGCGAGGAATAGGGCTTTATCTTGCATAACAACGTTCCCCCGGTCTTTTCATTCTTCAACTTCTGAAGATGACACCTTCTCCGAATTGGGCTCCCCAGTGCCTAAAGCTCCAACTCATGCTCGGAAGTTGAAGTTGATGACGGAGAAGCCTGAGCCTTATTTGAAAACTAATCGTACAAAAAGACCTTCCCGAATGCCTTCAGAAAGCCGCATCAGATTGAAAGATAATTCCTCAAAACTGGGTTCGGATTGGGAGGCTGTTGTACAGAGTTTTGGTCGTTCAATTGATCCACCGGAGGAGGAAGAGGAAGTTACCATTAGAATTACCAATATCAATTCGGAGACAACGGACTCTGCGGTGCACTCAATGTGCACGTCTTGTGGTAGCTTAGAGGGGCTTGTGAGGACAAAAGAAGATGCAGTTGACGCCTTGTTTAGCGTGAAAAACAAGGCAGGCATAAAACGCATAATCAAAAAATTGAATGAGACGATGGTGAACGGTCACAAGTGGTCAGCTGATTTACATGGAAGAGACTCCTCCGCTGAAGTGAGGAGCAAGCAAAGCAATGCGAACCATGATTTGAGATTGGAGATAAGCCGTCAACTGGCGGACGTAAGAAGGGAAGTCACAAGGAAGACAGTGTGCATACAAGACTTGGAGTGTCTGCATAACGCCTTGTTGCACATTGAGGGGGAGGCTCATCCTCACACCACCCACACCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.94

Weight (kDa)

9.17

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	8 cut(s)	62, 72, 97, 104, 451, 599, 783, 851
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	1 cut(s)	524
AcuI	CTGAAG	3 cut(s)	327, 426, 807
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	2 cut(s)	418, 507
AfiI	CCNNNNNNNGG	1 cut(s)	847
AgsI	TTSAA	8 cut(s)	130, 232, 300, 373, 406, 463, 525, 724
AjiI	CACGTC	1 cut(s)	618
AluBI	AGCT	5 cut(s)	172, 196, 350, 630, 758
AluI	AGCT	5 cut(s)	172, 196, 350, 630, 758
Alw21I	GWGCWC	3 cut(s)	174, 606, 617
Alw26I	GTCTC	3 cut(s)	578, 722, 768
Alw44I	GTGCAC	2 cut(s)	602, 613
AlwI	GGATC	1 cut(s)	524
ApaLI	GTGCAC	2 cut(s)	602, 613
ApeKI	GCWGC	3 cut(s)	65, 94, 188
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	34, 176, 748
BaeGI	GKGCMC	2 cut(s)	606, 617
BanII	GRGCYC	2 cut(s)	174, 335
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	3 cut(s)	174, 606, 617
BbvI	GCAGC	3 cut(s)	52, 81, 200
BccI	CCATC	1 cut(s)	727
BceAI	ACGGC	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	578, 722, 768
BfaI	CTAG	1 cut(s)	967
BisI	GCNGC	5 cut(s)	63, 66, 95, 189, 451
BlsI	GCNGC	5 cut(s)	64, 67, 96, 190, 452
Bme1390I	CCNGG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	618
BmiI	GGNNCC	2 cut(s)	148, 334
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	2 cut(s)	332, 491
BmsI	GCATC	3 cut(s)	150, 462, 649
BmuI	ACTGGG	2 cut(s)	332, 491
BpiI	GAAGAC	1 cut(s)	884
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	847
Bse1I	ACTGG	5 cut(s)	42, 166, 338, 486, 852
Bse3DI	GCAATG	1 cut(s)	814
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	943
BseLI	CCNNNNNNNGG	1 cut(s)	847
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	5 cut(s)	42, 166, 338, 486, 852
BseRI	GAGGAG	3 cut(s)	554, 769, 808
BseSI	GKGCMC	2 cut(s)	606, 617
BseXI	GCAGC	3 cut(s)	52, 81, 200
Bsh1236I	CGCG	1 cut(s)	62
BsiHKAI	GWGCWC	3 cut(s)	174, 606, 617
BsiSI	CCGG	2 cut(s)	283, 536
BslI	CCNNNNNNNGG	1 cut(s)	847
BsmAI	GTCTC	3 cut(s)	578, 722, 768
BsmBI	CGTCTC	1 cut(s)	722
BsmI	GAATGC	1 cut(s)	441
Bsp1286I	GDGCHC	4 cut(s)	174, 335, 606, 617
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	8 cut(s)	62, 72, 97, 104, 451, 599, 783, 851
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	148, 334
BspPI	GGATC	1 cut(s)	524
BspQI	GCTCTTC	2 cut(s)	162, 179
BsrDI	GCAATG	1 cut(s)	814
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	5 cut(s)	42, 166, 338, 486, 852
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	529
BssNI	GRCGYC	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	89, 743, 883
Bst6I	CTCTTC	4 cut(s)	162, 179, 540, 766
BstACI	GRCGYC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	70, 697, 800
BstDEI	CTNAG	2 cut(s)	393, 631
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	943
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	3 cut(s)	578, 722, 768
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 668, 705, 804
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	281
BstSLI	GKGCMC	2 cut(s)	606, 617
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	52, 81, 200
BstV2I	GAAGAC	1 cut(s)	884
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	943
BtsIMutI	CAGTG	4 cut(s)	85, 159, 345, 888
Cac8I	GCNNGC	3 cut(s)	70, 697, 800
CfoI	GCGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	2 cut(s)	417, 506
CviAII	CATG	4 cut(s)	209, 359, 767, 818
CviQI	GTAC	2 cut(s)	417, 506
DdeI	CTNAG	2 cut(s)	393, 631
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Eam1104I	CTCTTC	4 cut(s)	162, 179, 540, 766
EarI	CTCTTC	4 cut(s)	162, 179, 540, 766
EciI	GGCGGA	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	174, 335
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	3 cut(s)	327, 426, 807
Eco91I	GGTNACC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	174, 335
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	4 cut(s)	212, 362, 770, 821
FatI	CATG	4 cut(s)	208, 358, 766, 817
Fnu4HI	GCNGC	5 cut(s)	63, 66, 95, 189, 451
FokI	GGATG	1 cut(s)	930
FriOI	GRGCYC	2 cut(s)	174, 335
Fsp4HI	GCNGC	5 cut(s)	63, 66, 95, 189, 451
FspBI	CTAG	1 cut(s)	967
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	63, 66, 95, 189, 451
HapII	CCGG	2 cut(s)	283, 536
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	4 cut(s)	212, 362, 770, 821
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	2 cut(s)	667, 845
HindII	GTYRAC	2 cut(s)	667, 845
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	19, 593, 776
HpaII	CCGG	2 cut(s)	283, 536
HphI	GGTGA	3 cut(s)	34, 176, 748
Hpy166II	GTNNAC	6 cut(s)	77, 604, 615, 667, 739, 845
Hpy188I	TCNGA	9 cut(s)	18, 146, 307, 325, 366, 445, 458, 490, 583
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	6 cut(s)	77, 604, 615, 667, 739, 845
HpyAV	CCTTC	5 cut(s)	160, 328, 438, 450, 855
HpyCH4III	ACNGT	3 cut(s)	89, 743, 883
HpyCH4IV	ACGT	3 cut(s)	275, 617, 855
HpyCH4V	TGCA	7 cut(s)	267, 604, 615, 662, 888, 910, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 668, 705, 804
HpyF3I	CTNAG	2 cut(s)	393, 631
HpySE526I	ACGT	3 cut(s)	275, 617, 855
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	212, 362, 770, 821
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	529
LguI	GCTCTTC	2 cut(s)	162, 179
LmnI	GCTCC	4 cut(s)	146, 338, 355, 795
Lsp1109I	GCAGC	3 cut(s)	52, 81, 200
LweI	GCATC	3 cut(s)	150, 462, 649
MaeI	CTAG	1 cut(s)	967
MaeII	ACGT	3 cut(s)	275, 617, 855
MaeIII	GTNAC	4 cut(s)	40, 553, 743, 868
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	9 cut(s)	166, 179, 191, 288, 320, 557, 668, 783, 889
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	4 cut(s)	174, 335, 606, 617
MluCI	AATT	6 cut(s)	326, 469, 525, 564, 577, 719
MlyI	GAGTC	2 cut(s)	587, 770
MmeI	TCCRAC	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	2 cut(s)	758, 785
MspI	CCGG	2 cut(s)	283, 536
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	441
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	59, 668, 705, 804
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	4 cut(s)	212, 362, 770, 821
NlaIV	GGNNCC	2 cut(s)	148, 334
NmuCI	GTSAC	3 cut(s)	40, 743, 868
PciSI	GCTCTTC	2 cut(s)	162, 179
PctI	GAATGC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	64, 67, 96, 190, 452
PleI	GAGTC	2 cut(s)	587, 770
PpsI	GAGTC	2 cut(s)	587, 770
Psp124BI	GAGCTC	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	275
PspEI	GGTNACC	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	148, 334
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	418, 507
RsaNI	GTAC	2 cut(s)	417, 506
SacI	GAGCTC	1 cut(s)	174
SapI	GCTCTTC	2 cut(s)	162, 179
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	63, 66, 95, 189, 451
Sau3AI	GATC	1 cut(s)	529
SchI	GAGTC	2 cut(s)	587, 770
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	4 cut(s)	174, 335, 606, 617
SfaNI	GCATC	3 cut(s)	150, 462, 649
Sse9I	AATT	6 cut(s)	326, 469, 525, 564, 577, 719
SsiI	CCGC	8 cut(s)	62, 72, 97, 104, 451, 599, 783, 851
SspMI	CTAG	1 cut(s)	967
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	89, 743, 883
TaiI	ACGT	3 cut(s)	278, 620, 858
TaqI	TCGA	1 cut(s)	202
TasI	AATT	6 cut(s)	326, 469, 525, 564, 577, 719
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	2 cut(s)	65, 453
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	4 cut(s)	92, 166, 345, 888
TseFI	GTSAC	3 cut(s)	40, 743, 868
TseI	GCWGC	3 cut(s)	65, 94, 188
Tsp45I	GTSAC	3 cut(s)	40, 743, 868
TspDTI	ATGAA	2 cut(s)	171, 281
TspGWI	ACGGA	2 cut(s)	398, 605
TspRI	CASTG	4 cut(s)	92, 166, 345, 888
VneI	GTGCAC	2 cut(s)	602, 613
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.