Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Reverse (-)

791830 .. 794226

Gene Structure 2397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTGAACCCTAACAGGCTCCGGCTCCGGCTCCGAGCCTTCACCGGTAAACATGGCTTCATTTCACTGGCAGCGGCAAAGCTTCGATGTAGTGCTTGGATAGATAATTCTATCAACACATTCATTACAAGGGCATTGTCTTCGTATTCTGGAGATGATGACTTCTCAGAATTGGGATCCCCTGTGCTTAAAGCTGCAACTAGTCTTCCGAAGTTGATGACGGAGAAACCTGAGCCTTATAATAAGAAAGCTAACCGTAGGAGAAAACCGTCTGGAGTGCCGTTAGAAAGCAGCACCAGCTTGAAAAATGATTCCTCAAAACTGGAGAGTGTAGAAGCAAGCAAGAGACCTTTTTTGGCTGATGAGGTTTCTGTAAATTGCTTCATTCCTACAATTAGTCCACTAGTTGACAAAGAGGCAGTTAGCATTAGGATTGCCAACATCAACTCAGAGACCACTGATTCTGCGATACATTCTACGTGTACGTCCTATGGTTGCTTGGAGGGGCTTGTGCGAACAAAAGAGGATGCAGTGGATGCCTTCTTTAGCGTTGAGGACAATGCTGACATAGACAGCATAGTTGCAAAGTTGAATGATACAGTCGTGAATGACCATAAGTGGTCAGCTAAATTACATCATAGAGACTCCACTCCTGCTGTGATGAGCAAGGAAAGTAATGGTAACTTTAATGTGGGATTACATGTAAGCCGTCAGTTGGCTGAAGTGAGAAGGCAAGTCACCATGAAGACTGTGTGCATAGAAGATTTGGAGTATCTGCATAATGCCTTGGTGCACCTTGAAGCTCATTCTTGCAGCAGGAATAGTATTTCCAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

30.92

Weight (kDa)

7.11

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	2 cut(s)	171, 184
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflIII	ACRYGT	2 cut(s)	479, 700
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	7, 304, 592, 800
AhlI	ACTAGT	2 cut(s)	200, 403
AluBI	AGCT	6 cut(s)	82, 194, 251, 300, 626, 803
AluI	AGCT	6 cut(s)	82, 194, 251, 300, 626, 803
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	3 cut(s)	340, 446, 636
Alw44I	GTGCAC	1 cut(s)	791
AlwI	GGATC	2 cut(s)	171, 184
ApaLI	GTGCAC	1 cut(s)	791
ApeKI	GCWGC	4 cut(s)	71, 194, 291, 813
AsiGI	ACCGGT	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	34, 730
BaeGI	GKGCMC	1 cut(s)	795
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BamHI	GGATCC	1 cut(s)	176
BbsI	GAAGAC	3 cut(s)	132, 197, 752
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	4 cut(s)	83, 181, 303, 825
BceAI	ACGGC	2 cut(s)	265, 693
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BcoDI	GTCTC	3 cut(s)	340, 446, 636
BcuI	ACTAGT	2 cut(s)	200, 403
BfaI	CTAG	2 cut(s)	201, 404
BisI	GCNGC	5 cut(s)	72, 75, 195, 292, 814
BlsI	GCNGC	5 cut(s)	73, 76, 196, 293, 815
BmiI	GGNNCC	4 cut(s)	20, 26, 32, 178
BmsI	GCATC	2 cut(s)	517, 526
BpiI	GAAGAC	3 cut(s)	132, 197, 752
BpmI	CTGGAG	3 cut(s)	171, 294, 344
Bpu10I	CCTNAGC	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	340, 446
BsaJI	CCNNGG	2 cut(s)	786, 831
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	72, 327
BseDI	CCNNGG	2 cut(s)	786, 831
BseGI	GGATG	3 cut(s)	532, 541, 841
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	180, 222, 462
BseNI	ACTGG	2 cut(s)	72, 327
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	4 cut(s)	83, 181, 303, 825
BshTI	ACCGGT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	3 cut(s)	22, 28, 45
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	3 cut(s)	340, 446, 636
Bso31I	GGTCTC	2 cut(s)	340, 446
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	179, 223, 461
BspLI	GGNNCC	4 cut(s)	20, 26, 32, 178
BspPI	GGATC	2 cut(s)	171, 184
BspTNI	GGTCTC	2 cut(s)	340, 446
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	72, 327
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	786, 831
BssMI	GATC	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	786, 831
Bst4CI	ACNGT	4 cut(s)	257, 270, 601, 751
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	166, 231, 448
BstF5I	GGATG	3 cut(s)	532, 541, 841
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	3 cut(s)	340, 446, 636
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 536
BstNSI	RCATGY	1 cut(s)	704
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	4 cut(s)	83, 181, 303, 825
BstV2I	GAAGAC	3 cut(s)	132, 197, 752
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	532, 541, 841
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	65, 456, 537
Cac8I	GCNNGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	483
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	3 cut(s)	53, 701, 742
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	166, 231, 448
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	786, 831
Eco31I	GGTCTC	2 cut(s)	340, 446
Eco57I	CTGAAG	1 cut(s)	741
EcoT14I	CCWWGG	2 cut(s)	786, 831
ErhI	CCWWGG	2 cut(s)	786, 831
FaeI	CATG	3 cut(s)	56, 704, 745
FatI	CATG	3 cut(s)	52, 700, 741
Fnu4HI	GCNGC	5 cut(s)	72, 75, 195, 292, 814
FokI	GGATG	2 cut(s)	539, 548
Fsp4HI	GCNGC	5 cut(s)	72, 75, 195, 292, 814
FspBI	CTAG	2 cut(s)	201, 404
GluI	GCNGC	5 cut(s)	72, 75, 195, 292, 814
GsuI	CTGGAG	3 cut(s)	171, 294, 344
HapII	CCGG	3 cut(s)	22, 28, 45
Hin1II	CATG	3 cut(s)	56, 704, 745
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	311, 461, 644
HpaII	CCGG	3 cut(s)	22, 28, 45
HphI	GGTGA	2 cut(s)	34, 730
Hpy166II	GTNNAC	5 cut(s)	50, 401, 409, 483, 793
Hpy188I	TCNGA	4 cut(s)	35, 169, 210, 451
Hpy188III	TCNNGA	3 cut(s)	150, 273, 604
Hpy8I	GTNNAC	5 cut(s)	50, 401, 409, 483, 793
HpyAV	CCTTC	3 cut(s)	49, 550, 723
HpyCH4III	ACNGT	4 cut(s)	257, 270, 601, 751
HpyCH4IV	ACGT	2 cut(s)	479, 485
HpyCH4V	TGCA	7 cut(s)	197, 530, 584, 756, 778, 793, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 536
HpyF3I	CTNAG	3 cut(s)	166, 231, 448
HpySE526I	ACGT	2 cut(s)	479, 485
Hsp92II	CATG	3 cut(s)	56, 704, 745
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	3 cut(s)	24, 30, 36
Lsp1109I	GCAGC	4 cut(s)	83, 181, 303, 825
LweI	GCATC	2 cut(s)	517, 526
MaeI	CTAG	2 cut(s)	201, 404
MaeII	ACGT	2 cut(s)	479, 485
MaeIII	GTNAC	2 cut(s)	680, 736
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	4 cut(s)	132, 197, 757, 773
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	5 cut(s)	106, 170, 376, 393, 629
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	6 cut(s)	325, 358, 409, 496, 517, 547
MseI	TTAA	2 cut(s)	189, 687
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	3 cut(s)	22, 28, 45
MwoI	GCNNNNNNNGC	2 cut(s)	297, 536
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	56, 704, 745
NlaIV	GGNNCC	4 cut(s)	20, 26, 32, 178
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	1 cut(s)	704
PciI	ACATGT	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	311, 461
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	73, 76, 196, 293, 815
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	480
PscI	ACATGT	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	20, 26, 32, 178
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	189, 687
SatI	GCNGC	5 cut(s)	72, 75, 195, 292, 814
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	638
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	2 cut(s)	517, 526
SpeI	ACTAGT	2 cut(s)	200, 403
Sse9I	AATT	5 cut(s)	106, 170, 376, 393, 629
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	201, 404
StyI	CCWWGG	2 cut(s)	786, 831
TaaI	ACNGT	4 cut(s)	257, 270, 601, 751
TaiI	ACGT	2 cut(s)	482, 488
TaqI	TCGA	1 cut(s)	85
TasI	AATT	5 cut(s)	106, 170, 376, 393, 629
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	311, 461
Tru1I	TTAA	2 cut(s)	189, 687
Tru9I	TTAA	2 cut(s)	189, 687
TscAI	CASTG	3 cut(s)	72, 463, 537
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	4 cut(s)	71, 194, 291, 813
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	4 cut(s)	49, 112, 373, 758
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	72, 463, 537
VneI	GTGCAC	1 cut(s)	791
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	2 cut(s)	201, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.