Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005649

Physical Location & Seq

Genomic Coordinates Forward (+)

38514724 .. 38515506

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0348200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCGAGAGCTCTCCTCCCTCTCTTCTGGCGGCGGCAGACCCTATCTCTAGGGTTTTGCTCGTCGCGATCGTTGGCTTCCGCGGAGATTTCTTTCCCCCGTGAGGCCTGTCTGTCGCCCTCCTCGAGGTCGAGATTCCATTATGTTCAACCTGTGGGTTGGGGCATCCGGTTCTCATTGGCTTGCCGTTTGACACTTCATGGTTGTGCTAGTGAGGAGATTGGTCGGGGAATCAGCTGTTCGAGGCAATTTGGCCATACGAGGAATGTTTCTGATGCGGGTGTCTGGGTGACAAATCGGATCTGGGATCCTGGTTATGCGTTTTCCCTATCATGGGGAAGGCGGAGCTGCTGCGATGGTGATTGGGTTTGCTCTCTGGTGGTTGCCGGGGACGTTGGAGGACAGAATGGAGCCCAATCTGGGAGTTTGAGGACGTCCGGTGGAGTGGGATGGCTGGGTTCGTCCTGGACTGGTGTGATGGCGGCGGCCGTTGGAGAGGACGACAGTGGCAGTGCTGGCGGAGATGGTGCAATCCAAAGGTGGCGTGGCTCAGCTTGGCGGCGTCGGATTGGTGGTCTGGGTGCCCTGAGCACTCTCTTAGGGGACTGGGCCTGGATCCGGGTTCTGGTGTCATGGGCTGCAATAGGGCTCTTGGGTTCTGGGTGGGCTGCAAGGGTTAGACCCGCTCGCTTTTGGGCTCGAAGGGTATTTATTGCTGAAGTACTGGACAAGGAAGAAGGCATGGAAGAGGAGGCTGCTGCTCCTCTTCTGGCAAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.02

Weight (kDa)

9.32

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620 AT3G62620
fragaria_vesca	FvH4_5g39560 FvH4_5g39560
malus_domestica	MD11G1316900.v1.1
prunus_persica	Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1 Prupe.8G269900_v2.0.a1
pyrus_communis	pycom11g27660
rosa_chinensis	RchiOBHm_Chr7g0241871
rosa_laevigata	RLG00000000533
rosa_multiflora	Rmu_sc0001865.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218520
rosa_rugosa	Rorug07G0348200
rosa_samantha	Rh7AG502400 Rh7BG473700 Rh7CG519200 Rh7DG487900
rosa_wichuraiana	Rw7G042480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
AbsI	CCTCGAGG	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	686
AccII	CGCG	2 cut(s)	67, 83
AclWI	GGATC	5 cut(s)	302, 308, 315, 610, 623
AcoI	YGGCCR	2 cut(s)	253, 486
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	2 cut(s)	434, 562
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	7 cut(s)	103, 126, 333, 334, 420, 618, 625
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	3 cut(s)	310, 464, 611
AluBI	AGCT	4 cut(s)	11, 237, 348, 554
AluI	AGCT	4 cut(s)	11, 237, 348, 554
Alw21I	GWGCWC	2 cut(s)	13, 593
AlwI	GGATC	5 cut(s)	302, 308, 315, 610, 623
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	4 cut(s)	105, 253, 486, 609
ApeKI	GCWGC	6 cut(s)	348, 351, 638, 668, 755, 758
AspS9I	GGNCC	1 cut(s)	609
AsuC2I	CCSGG	2 cut(s)	388, 620
AsuHPI	GGTGA	2 cut(s)	301, 371
AvaI	CYCGRG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	2 cut(s)	307, 615
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	4 cut(s)	13, 415, 651, 700
Bbv12I	GWGCWC	2 cut(s)	13, 593
BbvI	GCAGC	6 cut(s)	335, 338, 625, 655, 742, 745
BccI	CCATC	4 cut(s)	350, 444, 472, 518
BceAI	ACGGC	2 cut(s)	171, 473
BciT130I	CCWGG	3 cut(s)	312, 466, 613
BcnI	CCSGG	2 cut(s)	388, 620
BfaI	CTAG	2 cut(s)	50, 210
BlpI	GCTNAGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	5 cut(s)	312, 388, 466, 613, 620
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	4 cut(s)	309, 412, 583, 617
BmrFI	CCNGG	5 cut(s)	312, 388, 466, 613, 620
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	174, 265
BmuI	ACTGGG	1 cut(s)	616
BplI	GAGNNNNNCTC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu1102I	GCTNAGC	1 cut(s)	550
BpuMI	CCSGG	2 cut(s)	388, 620
BsaHI	GRCGYC	2 cut(s)	434, 562
BsaJI	CCNNGG	2 cut(s)	81, 387
BsaWI	WCCGGW	2 cut(s)	168, 437
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 126, 333, 334, 420, 618, 625
Bse1I	ACTGG	3 cut(s)	475, 611, 729
BseBI	CCWGG	3 cut(s)	312, 466, 613
BseDI	CCNNGG	2 cut(s)	81, 387
BseGI	GGATG	2 cut(s)	165, 455
BseLI	CCNNNNNNNGG	7 cut(s)	103, 126, 333, 334, 420, 618, 625
BseMII	CTCAG	2 cut(s)	564, 578
BseNI	ACTGG	3 cut(s)	475, 611, 729
BseRI	GAGGAG	5 cut(s)	5, 112, 230, 753, 764
BseSI	GKGCMC	1 cut(s)	586
BseX3I	CGGCCG	1 cut(s)	486
BseXI	GCAGC	6 cut(s)	335, 338, 625, 655, 742, 745
BseYI	CCCAGC	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	67, 83
Bsh1285I	CGRYCG	2 cut(s)	71, 489
BshFI	GGCC	4 cut(s)	107, 255, 488, 611
BshNI	GGYRCC	1 cut(s)	581
BsiEI	CGRYCG	2 cut(s)	71, 489
BsiHKAI	GWGCWC	2 cut(s)	13, 593
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	4 cut(s)	169, 387, 438, 619
BslFI	GGGAC	2 cut(s)	404, 617
BslI	CCNNNNNNNGG	7 cut(s)	103, 126, 333, 334, 420, 618, 625
BsmFI	GGGAC	2 cut(s)	404, 617
BsnI	GGCC	4 cut(s)	107, 255, 488, 611
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	6 cut(s)	13, 415, 586, 593, 651, 700
Bsp143I	GATC	4 cut(s)	68, 300, 307, 615
Bsp1720I	GCTNAGC	1 cut(s)	550
Bsp68I	TCGCGA	1 cut(s)	67
BspANI	GGCC	4 cut(s)	107, 255, 488, 611
BspCNI	CTCAG	2 cut(s)	563, 579
BspFNI	CGCG	2 cut(s)	67, 83
BspLI	GGNNCC	4 cut(s)	309, 412, 583, 617
BspPI	GGATC	5 cut(s)	302, 308, 315, 610, 623
BspT107I	GGYRCC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	475, 611, 729
BssECI	CCNNGG	2 cut(s)	81, 387
BssMI	GATC	4 cut(s)	68, 300, 307, 615
BssNI	GRCGYC	2 cut(s)	434, 562
Bst2UI	CCWGG	3 cut(s)	312, 466, 613
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	3 cut(s)	29, 741, 771
BstACI	GRCGYC	2 cut(s)	434, 562
BstC8I	GCNNGC	3 cut(s)	184, 517, 688
BstDEI	CTNAG	3 cut(s)	550, 587, 598
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	165, 455
BstFNI	CGCG	2 cut(s)	67, 83
BstKTI	GATC	4 cut(s)	71, 303, 310, 618
BstMBI	GATC	4 cut(s)	68, 300, 307, 615
BstMCI	CGRYCG	2 cut(s)	71, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	516
BstNI	CCWGG	3 cut(s)	312, 466, 613
BstSCI	CCNGG	5 cut(s)	310, 386, 464, 611, 618
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	2 cut(s)	67, 83
BstV1I	GCAGC	6 cut(s)	335, 338, 625, 655, 742, 745
BstX2I	RGATCY	3 cut(s)	300, 307, 615
BstYI	RGATCY	3 cut(s)	300, 307, 615
BstZI	CGGCCG	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	107, 255, 488, 611
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	165, 455
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	511, 517
BtuMI	TCGCGA	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	184, 517, 688
Cfr13I	GGNCC	1 cut(s)	609
Cfr42I	CCGCGG	1 cut(s)	84
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	4 cut(s)	200, 333, 633, 742
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	3 cut(s)	550, 587, 598
DpnI	GATC	4 cut(s)	70, 302, 309, 617
DpnII	GATC	4 cut(s)	68, 300, 307, 615
EaeI	YGGCCR	2 cut(s)	253, 486
EagI	CGGCCG	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	29, 741, 771
EarI	CTCTTC	3 cut(s)	29, 741, 771
EciI	GGCGGA	2 cut(s)	358, 534
Ecl136II	GAGCTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	4 cut(s)	13, 415, 651, 700
Eco52I	CGGCCG	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	310, 464, 611
EcoT38I	GRGCYC	4 cut(s)	13, 415, 651, 700
FaeI	CATG	4 cut(s)	203, 336, 636, 745
FaiI	YATR	7 cut(s)	144, 201, 258, 318, 334, 634, 743
FaqI	GGGAC	2 cut(s)	404, 617
FatI	CATG	4 cut(s)	199, 332, 632, 741
FauI	CCCGC	2 cut(s)	271, 691
FokI	GGATG	2 cut(s)	152, 462
FriOI	GRGCYC	4 cut(s)	13, 415, 651, 700
FspBI	CTAG	2 cut(s)	50, 210
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	107, 255, 488, 611
HapII	CCGG	4 cut(s)	169, 387, 438, 619
HgaI	GACGC	1 cut(s)	551
Hin1I	GRCGYC	2 cut(s)	434, 562
Hin1II	CATG	4 cut(s)	203, 336, 636, 745
HinfI	GANTC	2 cut(s)	135, 231
HpaII	CCGG	4 cut(s)	169, 387, 438, 619
HphI	GGTGA	2 cut(s)	301, 371
Hpy188I	TCNGA	3 cut(s)	274, 300, 567
Hpy188III	TCNNGA	3 cut(s)	6, 66, 132
Hpy99I	CGWCG	2 cut(s)	67, 567
HpyAV	CCTTC	3 cut(s)	333, 696, 731
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	393, 434
HpyCH4V	TGCA	3 cut(s)	530, 641, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	516
HpyF3I	CTNAG	3 cut(s)	550, 587, 598
HpySE526I	ACGT	2 cut(s)	393, 434
Hsp92I	GRCGYC	2 cut(s)	434, 562
Hsp92II	CATG	4 cut(s)	203, 336, 636, 745
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	68, 300, 307, 615
LmnI	GCTCC	3 cut(s)	345, 410, 766
Lsp1109I	GCAGC	6 cut(s)	335, 338, 625, 655, 742, 745
LweI	GCATC	2 cut(s)	174, 265
MaeI	CTAG	2 cut(s)	50, 210
MaeII	ACGT	2 cut(s)	393, 434
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	4 cut(s)	70, 302, 309, 617
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	4 cut(s)	68, 300, 307, 615
MboII	GAAGA	4 cut(s)	16, 746, 758, 758
MflI	RGATCY	3 cut(s)	300, 307, 615
MhlI	GDGCHC	6 cut(s)	13, 415, 586, 593, 651, 700
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	255
MmeI	TCCRAC	3 cut(s)	376, 472, 545
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	781
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	83, 237
MspI	CCGG	4 cut(s)	169, 387, 438, 619
MspR9I	CCNGG	5 cut(s)	312, 388, 466, 613, 620
MvaI	CCWGG	3 cut(s)	312, 466, 613
MvnI	CGCG	2 cut(s)	67, 83
MwoI	GCNNNNNNNGC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	388, 620
NdeII	GATC	4 cut(s)	68, 300, 307, 615
NlaIII	CATG	4 cut(s)	203, 336, 636, 745
NlaIV	GGNNCC	4 cut(s)	309, 412, 583, 617
NmuCI	GTSAC	1 cut(s)	289
NruI	TCGCGA	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 122
PfeI	GAWTC	2 cut(s)	135, 231
PfoI	TCCNGGA	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	310, 464, 611
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	3 cut(s)	310, 464, 611
PspN4I	GGNNCC	4 cut(s)	309, 412, 583, 617
PspPI	GGNCC	1 cut(s)	609
PspXI	VCTCGAGB	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	300, 307, 615
PvuI	CGATCG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	237
RruI	TCGCGA	1 cut(s)	67
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	781
Sau3AI	GATC	4 cut(s)	68, 300, 307, 615
Sau96I	GGNCC	1 cut(s)	609
ScaI	AGTACT	1 cut(s)	723
ScrFI	CCNGG	5 cut(s)	312, 388, 466, 613, 620
SduI	GDGCHC	6 cut(s)	13, 415, 586, 593, 651, 700
SetI	ASST	9 cut(s)	13, 131, 154, 239, 350, 396, 437, 542, 556
SfaNI	GCATC	2 cut(s)	174, 265
Sfr274I	CTCGAG	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	1 cut(s)	248
SseBI	AGGCCT	1 cut(s)	107
SspMI	CTAG	2 cut(s)	50, 210
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	5 cut(s)	310, 386, 464, 611, 618
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	396, 437
TaqI	TCGA	5 cut(s)	5, 125, 131, 242, 700
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	5 cut(s)	34, 37, 485, 488, 562
TfiI	GAWTC	2 cut(s)	135, 231
Tru1I	TTAA	1 cut(s)	781
Tru9I	TTAA	1 cut(s)	781
TscAI	CASTG	2 cut(s)	511, 517
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	6 cut(s)	348, 351, 638, 668, 755, 758
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	511, 517
XagI	CCTNNNNNAGG	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	2 cut(s)	50, 210
ZraI	GACGTC	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.