Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

23322359 .. 23324283

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGACTCTCTCGCAACCGATCCAGCTTTCATTGATTCGGATGTATACCTCAGGTTAGGACTTATTATTGAGGGCAAACGATTGAAAAAGCCACCGACTGTTCTCTCACGCCTCTCTTCTTCTCTGGAGAGATCTCTGTTACTCAATCATGATGACAAGATTCTGCTTGGATCGCCAGACTCTGTTACCGTGTTTGACGGGAGATCTCCCCCTGAGATCAGTATTGCACACTACTTGGATCGCATTTTCAAGTACTCTTGCTGCAGTCCCTCCTGCTTCGTCATTGCGCATATCTACATTGATCACTTTCTCCATAAGACCCGAGCCCTTCTCAAACCCCTTAATGTCCACCGCCTTATCATTACAACTGTCATGTTAGCTGCTAAAGTCTTCGATGATAGGTATTTCAACAATGCATACTACGCAAGAGTGGGAGGTGTGACTACGAGAGAGTTAAACAGATTGGAGATGGAGTTGTTGTTTACCCTTGACTTCAAGCTTCAGGTAGATCCTCAGACGTTTCACACACACTGTTGTCAGTTAGAAAAGCAGAACAGAGACGGCTTCCAGATCGAGTGGCCCATAAAAGAAGCATGCCGAGCCAACAAAGAGACTTGGCAGAAGAGGACACCCGACTCACTCTGCTCTCAAACCACAGCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

221

Amino Acids

25.43

Weight (kDa)

8.44

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	60 - 167	7.2e-31	Cyclin
Cyclin_N	PF00134	75 - 167	5.2e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	4 cut(s)	14, 178, 246, 503
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	85, 250, 409, 496
AluBI	AGCT	3 cut(s)	26, 380, 499
AluI	AGCT	3 cut(s)	26, 380, 499
Alw26I	GTCTC	2 cut(s)	552, 605
AlwI	GGATC	4 cut(s)	14, 178, 246, 503
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	261, 380
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	579
AvaI	CYCGRG	1 cut(s)	321
AxyI	CCTNAGG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	248, 367
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	577
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	552, 605
BfmI	CTRYAG	1 cut(s)	262
BglII	AGATCT	2 cut(s)	131, 203
BisI	GCNGC	2 cut(s)	262, 381
BlsI	GCNGC	2 cut(s)	263, 382
BmcAI	AGTACT	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	579
BpiI	GAAGAC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpmI	CTGGAG	1 cut(s)	146
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 464, 488, 494
Bse21I	CCTNAGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	64, 204, 527
BseXI	GCAGC	2 cut(s)	248, 367
BshFI	GGCC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	552, 605
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	3 cut(s)	63, 205, 526
BspHI	TCATGA	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	4 cut(s)	14, 178, 246, 503
BsrDI	GCAATG	1 cut(s)	282
BssMI	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
BssNAI	GTATAC	1 cut(s)	46
Bst1107I	GTATAC	1 cut(s)	46
Bst4CI	ACNGT	4 cut(s)	100, 190, 370, 533
Bst6I	CTCTTC	2 cut(s)	121, 617
BstC8I	GCNNGC	2 cut(s)	595, 661
BstDEI	CTNAG	3 cut(s)	50, 213, 513
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	9 cut(s)	22, 134, 173, 206, 219, 241, 304, 511, 573
BstMAI	GTCTC	2 cut(s)	552, 605
BstMBI	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 422, 599
BstNSI	RCATGY	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	248, 367
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	3 cut(s)	131, 203, 508
BstYI	RGATCY	3 cut(s)	131, 203, 508
BstZ17I	GTATAC	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	595, 661
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	3 cut(s)	149, 373, 594
CviJI	RGCY	8 cut(s)	26, 91, 326, 380, 499, 564, 580, 602
CviKI_1	RGCY	8 cut(s)	26, 91, 326, 380, 499, 564, 580, 602
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	50, 213, 513
DpnI	GATC	9 cut(s)	21, 133, 172, 205, 218, 240, 303, 510, 572
DpnII	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
Eam1104I	CTCTTC	2 cut(s)	121, 617
EarI	CTCTTC	2 cut(s)	121, 617
Eco24I	GRGCYC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	485
Eco81I	CCTNAGG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	3 cut(s)	152, 376, 597
FaiI	YATR	8 cut(s)	46, 150, 291, 315, 374, 418, 584, 595
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	3 cut(s)	148, 372, 593
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	262, 381
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	262, 381
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	262, 381
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	152, 376, 597
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	5, 35, 160, 179, 635
Hpy166II	GTNNAC	3 cut(s)	46, 349, 483
Hpy188I	TCNGA	2 cut(s)	40, 516
Hpy188III	TCNNGA	3 cut(s)	125, 149, 568
Hpy8I	GTNNAC	3 cut(s)	46, 349, 483
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	4 cut(s)	100, 190, 370, 533
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	3 cut(s)	227, 264, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 422, 599
HpyF3I	CTNAG	3 cut(s)	50, 213, 513
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	152, 376, 597
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
LpnPI	CCDG	8 cut(s)	36, 37, 110, 189, 225, 286, 488, 581
Lsp1109I	GCAGC	2 cut(s)	248, 367
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	3 cut(s)	138, 184, 439
MalI	GATC	9 cut(s)	21, 133, 172, 205, 218, 240, 303, 510, 572
MboI	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
MboII	GAAGA	4 cut(s)	108, 111, 382, 634
MflI	RGATCY	3 cut(s)	131, 203, 508
MhlI	GDGCHC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	173, 629
MnlI	CCTC	7 cut(s)	59, 64, 122, 280, 428, 522, 618
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	342, 455
MwoI	GCNNNNNNNGC	3 cut(s)	172, 422, 599
NdeII	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
NlaIII	CATG	3 cut(s)	152, 376, 597
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	597
PaeI	GCATGC	1 cut(s)	597
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	35, 160
PkrI	GCNGC	2 cut(s)	263, 382
PleI	GAGTC	2 cut(s)	173, 629
PpsI	GAGTC	2 cut(s)	173, 629
PspPI	GGNCC	1 cut(s)	579
PstI	CTGCAG	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	131, 203, 508
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	342, 455
SatI	GCNGC	2 cut(s)	262, 381
Sau3AI	GATC	9 cut(s)	19, 131, 170, 203, 216, 238, 301, 508, 570
Sau96I	GGNCC	1 cut(s)	579
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	2 cut(s)	173, 629
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	9 cut(s)	28, 51, 56, 382, 404, 439, 501, 507, 521
SfcI	CTRYAG	1 cut(s)	262
SphI	GCATGC	1 cut(s)	597
SsiI	CCGC	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	100, 190, 370, 533
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	2 cut(s)	393, 573
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	35, 160
Tru1I	TTAA	2 cut(s)	342, 455
Tru9I	TTAA	2 cut(s)	342, 455
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	261, 380
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	536
XceI	RCATGY	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.