Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

53289094 .. 53291750

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG328000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGATCTTTGGGACTCGACAATGAAAATTTAGATGTTTACTTCTCTTTGGGGCTCAAACAATCAGGCAAAGGAGCTATGAAGATTCCTCCCCGGGTTCTGTCACCGCTCTCTTCACTTCTTGAGAGATCTGTTCAGAGCAATGAGATGCATATGGAGGCAGCAGAAATCAAGGAAGTGACAATATTTCATGGTTTAAGAGCACCCCCTTTGAGCATTCGACAATACATTGATCGCGTTTTTAAGTACTCTGGCTGTAGCCCTTCATGTTTTGTTGTTGCCAAGATCTATGTGGATAGATATCTTCAGTCAACACAAGTGCATTTGACTTCTTTCAATGTTCACCGACTTCTGATAACAAGTCTGATGCTGGCAGCAAAATTTATTGATGATGCATTCTTTAACAATGCATACTATGCCAAAGTGGGAGGAGTCAGCACAGCAGAGTTGAATAGGTTGGAGATGAAGTTTTTGTTTACTATAGATTTCAGACTTCAAGTTAGTATAGACACATTCAAGAAATACTGTTCTCAGCTAGAAAAGGAAGATGCAGTACACCAGATTGAACGTTCAATCCAAGCTTGTGGTGTCAAGGAGGATGAGATTGTCATATCCTCCTCTCAACGCATGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

212

Amino Acids

23.97

Weight (kDa)

7.68

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	49 - 165	2.2e-36	Cyclin
Cyclin_N	PF00134	75 - 165	2.9e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	107
AclI	AACGTT	1 cut(s)	568
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	28, 380
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	248, 555
AgsI	TTSAA	6 cut(s)	337, 451, 497, 517, 566, 573
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	3 cut(s)	77, 535, 581
AluI	AGCT	3 cut(s)	77, 535, 581
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	161, 374
ApoI	RAATTY	2 cut(s)	28, 380
AsuC2I	CCSGG	2 cut(s)	94, 95
AsuHPI	GGTGA	2 cut(s)	96, 335
AvaI	CYCGRG	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	173, 386
BcnI	CCSGG	2 cut(s)	94, 95
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	256, 480
BglII	AGATCT	2 cut(s)	128, 285
BisI	GCNGC	2 cut(s)	162, 375
BlsI	GCNGC	2 cut(s)	163, 376
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	2 cut(s)	94, 95
BmeT110I	CYCGRG	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	94, 95
BmsI	GCATC	4 cut(s)	138, 357, 382, 538
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	94, 95
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	92, 93
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	92, 93
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	545
BseRI	GAGGAG	2 cut(s)	444, 607
BseXI	GCAGC	2 cut(s)	173, 386
Bsh1236I	CGCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	216, 395
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	57, 205
Bsp143I	GATC	4 cut(s)	5, 128, 232, 285
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	92, 93
BssMI	GATC	4 cut(s)	5, 128, 232, 285
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	4 cut(s)	8, 131, 235, 288
BstMBI	GATC	4 cut(s)	5, 128, 232, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	92, 93
BstSFI	CTRYAG	2 cut(s)	256, 480
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	173, 386
BstX2I	RGATCY	3 cut(s)	5, 128, 285
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	3 cut(s)	5, 128, 285
BtsCI	GGATG	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	372
Cfr9I	CCCGGG	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	247, 554
CviAII	CATG	4 cut(s)	191, 267, 628, 636
CviJI	RGCY	6 cut(s)	55, 77, 255, 261, 535, 581
CviKI_1	RGCY	6 cut(s)	55, 77, 255, 261, 535, 581
CviQI	GTAC	2 cut(s)	247, 554
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	4 cut(s)	7, 130, 234, 287
DpnII	GATC	4 cut(s)	5, 128, 232, 285
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	302
EcoT22I	ATGCAT	3 cut(s)	153, 397, 412
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	4 cut(s)	194, 270, 631, 639
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	190, 266, 627, 635
FauNDI	CATATG	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	162, 375
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	162, 375
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	2 cut(s)	162, 375
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	4 cut(s)	194, 270, 631, 639
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	3 cut(s)	15, 85, 432
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	96, 335
Hpy166II	GTNNAC	5 cut(s)	40, 312, 343, 477, 556
Hpy188I	TCNGA	4 cut(s)	138, 354, 366, 491
Hpy188III	TCNNGA	2 cut(s)	122, 517
Hpy8I	GTNNAC	5 cut(s)	40, 312, 343, 477, 556
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	151, 322, 395, 410, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	4 cut(s)	194, 270, 631, 639
Kzo9I	GATC	4 cut(s)	5, 128, 232, 285
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	5 cut(s)	51, 107, 237, 356, 572
Lsp1109I	GCAGC	2 cut(s)	173, 386
LweI	GCATC	4 cut(s)	138, 357, 382, 538
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	2 cut(s)	102, 178
MalI	GATC	4 cut(s)	7, 130, 234, 287
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	4 cut(s)	5, 128, 232, 285
MboII	GAAGA	4 cut(s)	94, 105, 296, 557
MflI	RGATCY	3 cut(s)	5, 128, 285
MhlI	GDGCHC	2 cut(s)	57, 205
MluCI	AATT	2 cut(s)	28, 380
MlyI	GAGTC	2 cut(s)	9, 441
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	6 cut(s)	99, 151, 422, 589, 625, 628
Mph1103I	ATGCAT	3 cut(s)	153, 397, 412
MseI	TTAA	3 cut(s)	197, 243, 402
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	94, 95
Mva1269I	GAATGC	2 cut(s)	216, 395
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	416
NciI	CCSGG	2 cut(s)	94, 95
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	4 cut(s)	5, 128, 232, 285
NlaIII	CATG	4 cut(s)	194, 270, 631, 639
NmuCI	GTSAC	2 cut(s)	102, 178
NsiI	ATGCAT	3 cut(s)	153, 397, 412
PctI	GAATGC	2 cut(s)	216, 395
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	163, 376
PleI	GAGTC	2 cut(s)	9, 440
PpsI	GAGTC	2 cut(s)	9, 440
Psp1406I	AACGTT	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	5, 128, 285
RsaI	GTAC	2 cut(s)	248, 555
RsaNI	GTAC	2 cut(s)	247, 554
SaqAI	TTAA	3 cut(s)	197, 243, 402
SatI	GCNGC	2 cut(s)	162, 375
Sau3AI	GATC	4 cut(s)	5, 128, 232, 285
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	2 cut(s)	9, 441
ScrFI	CCNGG	2 cut(s)	94, 95
SduI	GDGCHC	2 cut(s)	57, 205
SetI	ASST	5 cut(s)	79, 458, 537, 571, 583
SfaNI	GCATC	4 cut(s)	138, 357, 382, 538
SfcI	CTRYAG	2 cut(s)	256, 480
SmaI	CCCGGG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	28, 380
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	92, 93
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	18, 220
TasI	AATT	2 cut(s)	28, 380
TatI	WGTACW	2 cut(s)	246, 553
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	3 cut(s)	197, 243, 402
Tru9I	TTAA	3 cut(s)	197, 243, 402
TseFI	GTSAC	2 cut(s)	102, 178
TseI	GCWGC	2 cut(s)	161, 374
Tsp45I	GTSAC	2 cut(s)	102, 178
TspDTI	ATGAA	5 cut(s)	39, 95, 179, 255, 479
TspMI	CCCGGG	1 cut(s)	93
XapI	RAATTY	2 cut(s)	28, 380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmaI	CCCGGG	1 cut(s)	93
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	3 cut(s)	153, 397, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.