Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

35032513 .. 35034453

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1264800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAAATTCCGCGGGTGCTGTCACCTCTCTCGTCAATTCTTGAGAGATATGTTCAAAGGAACGAGATGCTATTGGAGACAACAAAAATTAAACAAGTTATAACCATATATCATGGTTTACGAGCACCCCCTCTGAGCATTCGACAATATATTGATCGCATCTGTAAGTACTCTGGTTGTAGCCCATCGTGCTTCGTTGTTGCACAGATCTACCTTGACCGATATCTTCAGTGCACGCAAGTGCATTTAACTTCTTTCAATGTTCACCGGCTACTGATAACAAGTGTAATGCTAGCAGCAAAATTTATGGATGACGCATTCTTCAACAATGCATACTATGCAAAAGTGGGAGGAGTGAGCACGGCAGAGTTGAATAGGTTGGAAATCAAGTTCTTGTTTACCATAGATTTCAGACTGCAAGTTACTATAGAGACATTCAATAAGTATTGCTCTCAACTGGATAAAGAAGCTACAGGAGTCCAGATCGAACGCTCGATCCAAGCTTGCAGGATCAAAGAGAATTGGTCGAAGTCAAAAAAGAAAGATTCAACTTATGTTCACACGGTTGCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

192

Amino Acids

22.13

Weight (kDa)

9.47

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	23 - 139	1.7e-38	Cyclin
Cyclin_N	PF00134	49 - 139	7e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccII	CGCG	1 cut(s)	13
AciI	CCGC	2 cut(s)	11, 13
AclWI	GGATC	2 cut(s)	490, 518
AcsI	RAATTY	2 cut(s)	6, 302
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	56, 259, 325, 373, 439, 549
AleI	CACNNNNGTG	1 cut(s)	239
AloI	GAACNNNNNNTCC	4 cut(s)	374, 406, 480, 512
AluBI	AGCT	2 cut(s)	470, 503
AluI	AGCT	2 cut(s)	470, 503
Alw21I	GWGCWC	3 cut(s)	127, 236, 362
Alw26I	GTCTC	2 cut(s)	71, 425
Alw44I	GTGCAC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	490, 518
ApaLI	GTGCAC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	2 cut(s)	6, 302
AsuHPI	GGTGA	2 cut(s)	15, 257
AsuNHI	GCTAGC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	127, 236, 362
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	71, 425
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	426, 471
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	170
BmsI	GCATC	2 cut(s)	57, 168
BmtI	GCTAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	13
BsiHKAI	GWGCWC	3 cut(s)	127, 236, 362
BsiSI	CCGG	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	71, 425
BsmI	GAATGC	2 cut(s)	138, 317
Bsp1286I	GDGCHC	3 cut(s)	127, 236, 362
Bsp143I	GATC	5 cut(s)	154, 207, 483, 495, 510
BspACI	CCGC	2 cut(s)	11, 13
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	13
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	490, 518
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	5 cut(s)	154, 207, 483, 495, 510
Bst4CI	ACNGT	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	236, 294, 505
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	5 cut(s)	157, 210, 486, 498, 513
BstMAI	GTCTC	2 cut(s)	71, 425
BstMBI	GATC	5 cut(s)	154, 207, 483, 495, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 338
BstSFI	CTRYAG	2 cut(s)	426, 471
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	236, 294, 505
Cfr10I	RCCGGY	1 cut(s)	267
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	183, 271, 470, 503
CviKI_1	RGCY	4 cut(s)	183, 271, 470, 503
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	5 cut(s)	156, 209, 485, 497, 512
DpnII	GATC	5 cut(s)	154, 207, 483, 495, 510
Eco32I	GATATC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	334
FaeI	CATG	1 cut(s)	116
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	2 cut(s)	477, 545
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	15, 257
Hpy166II	GTNNAC	5 cut(s)	119, 234, 265, 399, 559
Hpy188I	TCNGA	2 cut(s)	135, 413
Hpy188III	TCNNGA	2 cut(s)	41, 481
Hpy8I	GTNNAC	5 cut(s)	119, 234, 265, 399, 559
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	7 cut(s)	203, 234, 244, 332, 341, 418, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 338
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	116
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	154, 207, 483, 495, 510
LpnPI	CCDG	6 cut(s)	159, 281, 443, 459, 493, 494
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	57, 168
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	21, 421
MalI	GATC	5 cut(s)	156, 209, 485, 497, 512
MboI	GATC	5 cut(s)	154, 207, 483, 495, 510
MboII	GAAGA	2 cut(s)	218, 313
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	127, 236, 362
MluCI	AATT	5 cut(s)	6, 36, 87, 302, 520
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	3 cut(s)	36, 141, 344
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	2 cut(s)	90, 248
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	138, 317
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	189, 338
NdeII	GATC	5 cut(s)	154, 207, 483, 495, 510
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	239
PctI	GAATGC	2 cut(s)	138, 317
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	239
SacII	CCGCGG	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	90, 248
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	5 cut(s)	154, 207, 483, 495, 510
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	486
SduI	GDGCHC	3 cut(s)	127, 236, 362
SetI	ASST	5 cut(s)	28, 216, 380, 472, 505
SfaNI	GCATC	2 cut(s)	57, 168
SfcI	CTRYAG	2 cut(s)	426, 471
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	5 cut(s)	6, 36, 87, 302, 520
SsiI	CCGC	2 cut(s)	11, 13
SspMI	CTAG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	142, 486, 494, 527
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	6, 36, 87, 302, 520
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	2 cut(s)	90, 248
Tru9I	TTAA	2 cut(s)	90, 248
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	6, 302
XspI	CTAG	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.