Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

40341420 .. 40343671

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1285000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCTACTATTGTTCTGCCTTTGCTTGTTCATATAATTTCTTGAATATGGGAACTTTAGCACTTGACAATGAAAATGGAAGTTCAGATGTTTACCTCTCCTTGGGGCTTACGACATCGGGCAAAGGTGTAGTGAAAACTCCTCGGGTGCTGTCACCTCTCTCTTCAATTCTCGAGAGATCTGTTCAAAGGAACGAGATGCTATTGGAGACAACAAATATTAAAGAAGTTATAACCATATTTCATGGTTTAAGAGCACCCCCTCTGAGCATTCGACAGTATATTGATCGCATCTGTAAGTACTCTGGTTGTAGCCCATCGTGCTTCGTTGTTGCGCAGATCTATGTTGACAGATATCTTAAGTGCACAGAAGTGCATTTAACTTCTTTCAATGTTCACCGGCTTCTGATAACGAGTGTAATGCTAGCGGCGAAATTTATGGATGACGCATTCTTCAACAACGCATACTATGCAAAAGTGGGAGGAGTGAGCACAGCGGAGTTGAATAGGTTGGAAATGAAGTTCTTGTTTACGATAGATTTCAGACTGCAAGTTAATCTAGAGACATTCACAAAATATTGCTCTCAACTGGAAAAAGAAGCTGCAGGAGTCCAGATCGAACGCTCAATCCAAGCTTGCGGGATCAAAGAGAATTGGTCGAAGTCGAAAAAGGAAGATTCAACTTACGCTCGCACAGTTGCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

8.72

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	65 - 183	4.2e-38	Cyclin
Cyclin_N	PF00134	93 - 183	7.8e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc16I	TGCGCA	1 cut(s)	336
AciI	CCGC	3 cut(s)	428, 497, 639
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	46, 168, 188, 391, 457, 505, 681
AleI	CACNNNNGTG	1 cut(s)	371
AloI	GAACNNNNNNTCC	4 cut(s)	506, 538, 612, 644
AluBI	AGCT	3 cut(s)	6, 602, 635
AluI	AGCT	3 cut(s)	6, 602, 635
Alw21I	GWGCWC	3 cut(s)	259, 368, 494
Alw26I	GTCTC	2 cut(s)	203, 557
Alw44I	GTGCAC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	650
Ama87I	CYCGRG	2 cut(s)	144, 173
ApaLI	GTGCAC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	147, 389
AsuNHI	GCTAGC	1 cut(s)	424
AvaI	CYCGRG	2 cut(s)	144, 173
BaeGI	GKGCMC	1 cut(s)	368
Bbv12I	GWGCWC	3 cut(s)	259, 368, 494
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BcoDI	GTCTC	2 cut(s)	203, 557
BfaI	CTAG	2 cut(s)	425, 560
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	2 cut(s)	179, 339
BisI	GCNGC	2 cut(s)	429, 603
BlsI	GCNGC	2 cut(s)	430, 604
BmcAI	AGTACT	1 cut(s)	302
BmeT110I	CYCGRG	2 cut(s)	144, 173
BmsI	GCATC	2 cut(s)	189, 300
BmtI	GCTAGC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	102, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	102, 143
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	132, 498
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	589
BsiHKAI	GWGCWC	3 cut(s)	259, 368, 494
BsiHKCI	CYCGRG	2 cut(s)	144, 173
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	2 cut(s)	203, 557
BsmI	GAATGC	2 cut(s)	270, 449
BsoBI	CYCGRG	2 cut(s)	144, 173
Bsp1286I	GDGCHC	3 cut(s)	259, 368, 494
Bsp143I	GATC	5 cut(s)	179, 286, 339, 615, 642
BspACI	CCGC	3 cut(s)	428, 497, 639
BspCNI	CTCAG	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	607
BspOI	GCTAGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	650
BspTI	CTTAAG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	102, 143
BssMI	GATC	5 cut(s)	179, 286, 339, 615, 642
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	279, 697
Bst6I	CTCTTC	1 cut(s)	169
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	426, 637, 691
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	5 cut(s)	182, 289, 342, 618, 645
BstMAI	GTCTC	2 cut(s)	203, 557
BstMBI	GATC	5 cut(s)	179, 286, 339, 615, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 470
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	2 cut(s)	179, 339
BstYI	RGATCY	2 cut(s)	179, 339
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	426, 637, 691
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	399
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	6 cut(s)	6, 109, 315, 403, 602, 635
CviKI_1	RGCY	6 cut(s)	6, 109, 315, 403, 602, 635
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	5 cut(s)	181, 288, 341, 617, 644
DpnII	GATC	5 cut(s)	179, 286, 339, 615, 642
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	356
Eco88I	CYCGRG	2 cut(s)	144, 173
EcoRV	GATATC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	248
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	632
Fnu4HI	GCNGC	2 cut(s)	429, 603
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	429, 603
FspBI	CTAG	2 cut(s)	425, 560
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	2 cut(s)	429, 603
HapII	CCGG	1 cut(s)	400
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	2 cut(s)	609, 677
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	2 cut(s)	147, 389
Hpy166II	GTNNAC	5 cut(s)	94, 349, 366, 397, 531
Hpy188I	TCNGA	4 cut(s)	88, 267, 408, 545
Hpy188III	TCNNGA	5 cut(s)	43, 173, 175, 560, 613
Hpy8I	GTNNAC	5 cut(s)	94, 349, 366, 397, 531
HpyCH4III	ACNGT	2 cut(s)	279, 697
HpyCH4V	TGCA	5 cut(s)	366, 376, 473, 550, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 470
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	5 cut(s)	179, 286, 339, 615, 642
LpnPI	CCDG	5 cut(s)	291, 413, 575, 591, 626
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	2 cut(s)	189, 300
MaeI	CTAG	2 cut(s)	425, 560
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	5 cut(s)	181, 288, 341, 617, 644
MboI	GATC	5 cut(s)	179, 286, 339, 615, 642
MboII	GAAGA	3 cut(s)	156, 445, 686
MflI	RGATCY	2 cut(s)	179, 339
MhlI	GDGCHC	3 cut(s)	259, 368, 494
MluCI	AATT	4 cut(s)	37, 168, 434, 652
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	5 cut(s)	107, 153, 168, 273, 476
MseI	TTAA	5 cut(s)	222, 251, 360, 380, 555
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	400
Mva1269I	GAATGC	2 cut(s)	270, 449
MwoI	GCNNNNNNNGC	2 cut(s)	321, 470
NdeII	GATC	5 cut(s)	179, 286, 339, 615, 642
NheI	GCTAGC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	153
NsbI	TGCGCA	1 cut(s)	336
OliI	CACNNNNGTG	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	173
PctI	GAATGC	2 cut(s)	270, 449
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	430, 604
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PsiI	TTATAA	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	179, 339
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	5 cut(s)	222, 251, 360, 380, 555
SatI	GCNGC	2 cut(s)	429, 603
Sau3AI	GATC	5 cut(s)	179, 286, 339, 615, 642
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	1 cut(s)	618
SduI	GDGCHC	3 cut(s)	259, 368, 494
SetI	ASST	7 cut(s)	8, 99, 130, 160, 512, 604, 637
SfaNI	GCATC	2 cut(s)	189, 300
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	173, 359
SmoI	CTYRAG	2 cut(s)	173, 359
Sse9I	AATT	4 cut(s)	37, 168, 434, 652
SsiI	CCGC	3 cut(s)	428, 497, 639
SspI	AATATT	2 cut(s)	220, 578
SspMI	CTAG	2 cut(s)	425, 560
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	279, 697
TaqI	TCGA	5 cut(s)	174, 274, 618, 659, 665
TasI	AATT	4 cut(s)	37, 168, 434, 652
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	5 cut(s)	222, 251, 360, 380, 555
Tru9I	TTAA	5 cut(s)	222, 251, 360, 380, 555
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	21, 87, 233, 533
Vha464I	CTTAAG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	559
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	2 cut(s)	425, 560
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.