Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

54235731 .. 54237787

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGATCTTTGGGACTTGACAATGAAAATTTAGGAACAGATGTTTACTTCTCTTTGGGGCTCAAACAATCAGGCAAAGGAGCTATGAAGTTTCCTCCCCGGGTTCTATCACCGCTCTCTTCACTTCTTGAGAGATCTGTTCAGAGCAATGAGATGCATATGGAGGCAGCAGAAATCAAGGAAGTTACAATATTTCATGGTTTAAGAGCACCCCCTTTGAGCATTCGACAATACATTGATCGCGTTTTTAAGTACTCTGGCTGTAGCCCTTCATGTTTTGTTGTTGCCAAGATCTATGTGGATAGATATCTTCAGTCAACACAAGTGCATTTGACTTCTTTCAATGTTCACCGACTTCTGATAACAAGTGTGATGCTGGCAGCAAAATTTATTGATGATGCATTCTTTAACAATGCATACTATGCCAAAGTGGGAGGAGTCAGCACAGCAGAGTTGAATAGGTTGGAGATGAAGTTTTTGTTTACTATAGATTTCAGACTTCAAGTTAGTATAGACACATTCAAGAAATACTGTTCTCAGCTAGAAAAGGAAGATGCAGTACACCAGATTGAACGTTCAATCCAAGCTTGTGGTGTCAAGGAGGATGAGATTGTCATATCCTCCTCTCAACGCATGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

214

Amino Acids

24.15

Weight (kDa)

7.68

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	51 - 167	1.3e-36	Cyclin
Cyclin_N	PF00134	77 - 167	9.9e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	113
AclI	AACGTT	1 cut(s)	574
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	28, 386
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	254, 561
AgsI	TTSAA	6 cut(s)	343, 457, 503, 523, 572, 579
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	83, 541, 587
AluI	AGCT	3 cut(s)	83, 541, 587
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	167, 380
ApoI	RAATTY	2 cut(s)	28, 386
AsuC2I	CCSGG	2 cut(s)	100, 101
AsuHPI	GGTGA	2 cut(s)	102, 341
AvaI	CYCGRG	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	179, 392
BcnI	CCSGG	2 cut(s)	100, 101
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	2 cut(s)	262, 486
BglII	AGATCT	2 cut(s)	134, 291
BisI	GCNGC	2 cut(s)	168, 381
BlsI	GCNGC	2 cut(s)	169, 382
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	100, 101
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	100, 101
BmsI	GCATC	4 cut(s)	144, 363, 388, 544
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	100, 101
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	98, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	98, 99
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	551
BseRI	GAGGAG	2 cut(s)	450, 613
BseXI	GCAGC	2 cut(s)	179, 392
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	222, 401
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	63, 211
Bsp143I	GATC	4 cut(s)	5, 134, 238, 291
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	243
BspPI	GGATC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	98, 99
BssMI	GATC	4 cut(s)	5, 134, 238, 291
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	4 cut(s)	8, 137, 241, 294
BstMBI	GATC	4 cut(s)	5, 134, 238, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	98, 99
BstSFI	CTRYAG	2 cut(s)	262, 486
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	179, 392
BstX2I	RGATCY	3 cut(s)	5, 134, 291
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	3 cut(s)	5, 134, 291
BtsCI	GGATG	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	378
Cfr9I	CCCGGG	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	253, 560
CviAII	CATG	4 cut(s)	197, 273, 634, 642
CviJI	RGCY	6 cut(s)	61, 83, 261, 267, 541, 587
CviKI_1	RGCY	6 cut(s)	61, 83, 261, 267, 541, 587
CviQI	GTAC	2 cut(s)	253, 560
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	7, 136, 240, 293
DpnII	GATC	4 cut(s)	5, 134, 238, 291
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	308
EcoT22I	ATGCAT	3 cut(s)	159, 403, 418
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	4 cut(s)	200, 276, 637, 645
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	196, 272, 633, 641
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	168, 381
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	168, 381
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	2 cut(s)	168, 381
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	4 cut(s)	200, 276, 637, 645
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	102, 341
Hpy166II	GTNNAC	5 cut(s)	46, 318, 349, 483, 562
Hpy188I	TCNGA	3 cut(s)	144, 360, 497
Hpy188III	TCNNGA	2 cut(s)	128, 523
Hpy8I	GTNNAC	5 cut(s)	46, 318, 349, 483, 562
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	157, 328, 401, 416, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	4 cut(s)	200, 276, 637, 645
Kzo9I	GATC	4 cut(s)	5, 134, 238, 291
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	57, 113, 243, 362, 578
Lsp1109I	GCAGC	2 cut(s)	179, 392
LweI	GCATC	4 cut(s)	144, 363, 388, 544
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	4 cut(s)	7, 136, 240, 293
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	4 cut(s)	5, 134, 238, 291
MboII	GAAGA	3 cut(s)	111, 302, 563
MflI	RGATCY	3 cut(s)	5, 134, 291
MhlI	GDGCHC	2 cut(s)	63, 211
MluCI	AATT	2 cut(s)	28, 386
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	105, 157, 428, 595, 631, 634
Mph1103I	ATGCAT	3 cut(s)	159, 403, 418
MseI	TTAA	3 cut(s)	203, 249, 408
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	100, 101
Mva1269I	GAATGC	2 cut(s)	222, 401
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	2 cut(s)	100, 101
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	4 cut(s)	5, 134, 238, 291
NlaIII	CATG	4 cut(s)	200, 276, 637, 645
NsiI	ATGCAT	3 cut(s)	159, 403, 418
PctI	GAATGC	2 cut(s)	222, 401
PkrI	GCNGC	2 cut(s)	169, 382
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	5, 134, 291
RsaI	GTAC	2 cut(s)	254, 561
RsaNI	GTAC	2 cut(s)	253, 560
SaqAI	TTAA	3 cut(s)	203, 249, 408
SatI	GCNGC	2 cut(s)	168, 381
Sau3AI	GATC	4 cut(s)	5, 134, 238, 291
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	100, 101
SduI	GDGCHC	2 cut(s)	63, 211
SetI	ASST	5 cut(s)	85, 464, 543, 577, 589
SfaNI	GCATC	4 cut(s)	144, 363, 388, 544
SfcI	CTRYAG	2 cut(s)	262, 486
SmaI	CCCGGG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	28, 386
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	98, 99
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	28, 386
TatI	WGTACW	2 cut(s)	252, 559
Tru1I	TTAA	3 cut(s)	203, 249, 408
Tru9I	TTAA	3 cut(s)	203, 249, 408
TseI	GCWGC	2 cut(s)	167, 380
TspDTI	ATGAA	5 cut(s)	39, 101, 185, 261, 485
TspMI	CCCGGG	1 cut(s)	99
XapI	RAATTY	2 cut(s)	28, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	254
Zsp2I	ATGCAT	3 cut(s)	159, 403, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.