Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024447.1

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

44977 .. 46488

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024447.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ctgcatcttccttgttctgctccgagctcattttcatgtagaccaagcaacaagcacagaaaacagagatatagctcaatctctctcttgaatattatgggatctttgggacttgacaatgaaaatttaggaacagatgtttacttctctttggggctcaaacaatcaggcaaaggagctatgaagtttcctccccgggttctgtcaccgctctcttcacttcttgagagatctgttcagagcaatgagatgcatatggaggcagcagaaatcaaggaagttaccatatttcatggtttaagagcaccccctttgagcattcgacaatacattgatcgcgtttttaagtactctggctgtagcccttcatgttttgttgttgccaagatctatgtggatagatatcttcagtcaacacaagtgcatttgacttctttcaatgttcaccgacttctgataacaagtgtgatgctggcagcaaaatttattgatgatgcattctttaacaatgcatactatgccaaagtgggaggagtcagcacagcagagttgaataggttggagatgaagtttttgtttactatagatttcagacttcaagttagtatagacacattcaagaaatactgttctcagctagaaaaggaagatgcagtacaccagattgaacgttcaatccaagcttgtggtgtcaaggaggatgagattgtcatatcctcctctcaacgcatgattacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

246

Amino Acids

27.76

Weight (kDa)

8.98

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	670
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	124, 482
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	350, 657
AgsI	TTSAA	7 cut(s)	91, 439, 553, 599, 619, 668, 675
AloI	GAACNNNNNNTCC	2 cut(s)	660, 692
AluBI	AGCT	5 cut(s)	27, 75, 179, 637, 683
AluI	AGCT	5 cut(s)	27, 75, 179, 637, 683
Alw21I	GWGCWC	2 cut(s)	29, 307
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	263, 476
ApoI	RAATTY	2 cut(s)	124, 482
AsuC2I	CCSGG	2 cut(s)	196, 197
AsuHPI	GGTGA	2 cut(s)	198, 437
AvaI	CYCGRG	1 cut(s)	195
BanII	GRGCYC	2 cut(s)	29, 159
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
Bbv12I	GWGCWC	2 cut(s)	29, 307
BbvI	GCAGC	2 cut(s)	275, 488
BcnI	CCSGG	2 cut(s)	196, 197
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	2 cut(s)	358, 582
BglII	AGATCT	2 cut(s)	230, 387
BisI	GCNGC	2 cut(s)	264, 477
BlsI	GCNGC	2 cut(s)	265, 478
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	196, 197
BmeT110I	CYCGRG	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	196, 197
BmsI	GCATC	5 cut(s)	13, 240, 459, 484, 640
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	196, 197
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	194, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bse3DI	GCAATG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	194, 195
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	546, 709
BseXI	GCAGC	2 cut(s)	275, 488
Bsh1236I	CGCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	29, 307
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	2 cut(s)	318, 497
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	29, 159, 307
Bsp143I	GATC	4 cut(s)	101, 230, 334, 387
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	194, 195
BssMI	GATC	4 cut(s)	101, 230, 334, 387
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	104, 233, 337, 390
BstMBI	GATC	4 cut(s)	101, 230, 334, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	194, 195
BstSFI	CTRYAG	2 cut(s)	358, 582
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	275, 488
BstX2I	RGATCY	3 cut(s)	101, 230, 387
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	3 cut(s)	101, 230, 387
BtsCI	GGATG	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	474
Cfr9I	CCCGGG	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	349, 656
CviAII	CATG	5 cut(s)	36, 293, 369, 730, 738
CviJI	RGCY	8 cut(s)	27, 75, 157, 179, 357, 363, 637, 683
CviKI_1	RGCY	8 cut(s)	27, 75, 157, 179, 357, 363, 637, 683
CviQI	GTAC	2 cut(s)	349, 656
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	4 cut(s)	103, 232, 336, 389
DpnII	GATC	4 cut(s)	101, 230, 334, 387
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	29, 159
Eco32I	GATATC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	404
EcoT22I	ATGCAT	3 cut(s)	255, 499, 514
EcoT38I	GRGCYC	2 cut(s)	29, 159
FaeI	CATG	5 cut(s)	39, 296, 372, 733, 741
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	5 cut(s)	35, 292, 368, 729, 737
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	264, 477
FokI	GGATG	1 cut(s)	713
FriOI	GRGCYC	2 cut(s)	29, 159
Fsp4HI	GCNGC	2 cut(s)	264, 477
FspBI	CTAG	1 cut(s)	638
GluI	GCNGC	2 cut(s)	264, 477
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	5 cut(s)	39, 296, 372, 733, 741
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	1 cut(s)	534
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	198, 437
Hpy166II	GTNNAC	6 cut(s)	41, 142, 414, 445, 579, 658
Hpy188I	TCNGA	4 cut(s)	24, 240, 456, 593
Hpy188III	TCNNGA	3 cut(s)	88, 224, 619
Hpy8I	GTNNAC	6 cut(s)	41, 142, 414, 445, 579, 658
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	6 cut(s)	4, 253, 424, 497, 512, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	5 cut(s)	39, 296, 372, 733, 741
Kzo9I	GATC	4 cut(s)	101, 230, 334, 387
LmnI	GCTCC	2 cut(s)	25, 176
LpnPI	CCDG	5 cut(s)	153, 209, 339, 458, 674
Lsp1109I	GCAGC	2 cut(s)	275, 488
LweI	GCATC	5 cut(s)	13, 240, 459, 484, 640
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	204, 280
MalI	GATC	4 cut(s)	103, 232, 336, 389
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	4 cut(s)	101, 230, 334, 387
MboII	GAAGA	3 cut(s)	207, 398, 659
MflI	RGATCY	3 cut(s)	101, 230, 387
MhlI	GDGCHC	3 cut(s)	29, 159, 307
MluCI	AATT	2 cut(s)	124, 482
MlyI	GAGTC	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	6 cut(s)	201, 253, 524, 691, 727, 730
Mph1103I	ATGCAT	3 cut(s)	255, 499, 514
MseI	TTAA	3 cut(s)	299, 345, 504
MslI	CAYNNNNRTG	1 cut(s)	34
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	196, 197
Mva1269I	GAATGC	2 cut(s)	318, 497
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	2 cut(s)	196, 197
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	4 cut(s)	101, 230, 334, 387
NlaIII	CATG	5 cut(s)	39, 296, 372, 733, 741
NmuCI	GTSAC	1 cut(s)	204
NsiI	ATGCAT	3 cut(s)	255, 499, 514
PctI	GAATGC	2 cut(s)	318, 497
PkrI	GCNGC	2 cut(s)	265, 478
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	670
PsuI	RGATCY	3 cut(s)	101, 230, 387
RsaI	GTAC	2 cut(s)	350, 657
RsaNI	GTAC	2 cut(s)	349, 656
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	299, 345, 504
SatI	GCNGC	2 cut(s)	264, 477
Sau3AI	GATC	4 cut(s)	101, 230, 334, 387
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	196, 197
SduI	GDGCHC	3 cut(s)	29, 159, 307
SetI	ASST	7 cut(s)	29, 77, 181, 560, 639, 673, 685
SfaNI	GCATC	5 cut(s)	13, 240, 459, 484, 640
SfcI	CTRYAG	2 cut(s)	358, 582
SmaI	CCCGGG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	124, 482
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	194, 195
TaaI	ACNGT	1 cut(s)	629
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	322
TasI	AATT	2 cut(s)	124, 482
TatI	WGTACW	2 cut(s)	348, 655
Tru1I	TTAA	3 cut(s)	299, 345, 504
Tru9I	TTAA	3 cut(s)	299, 345, 504
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	2 cut(s)	263, 476
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	6 cut(s)	24, 135, 197, 281, 357, 581
TspMI	CCCGGG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	124, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmaI	CCCGGG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	638
ZrmI	AGTACT	1 cut(s)	350
Zsp2I	ATGCAT	3 cut(s)	255, 499, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.