Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

28079740 .. 28080132

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTAGCAGCGAAATTTATGGATGACGCATTCTTCAACAACGCATACTACGCAAAAGTGGGAGGAGTGAGCACGGCGGAGTTGAATAGGTTGGAAATGAAGTTCTTGTTTACTATAGATTTCAGACTGCAAGTTACTCTAGAGACATTCACAAAATATTGCTCTCAACTGGAAAAAGAAGCTGCAGGAGTCCAGATCGAACGCTCAATCCAAGCTTGCGGGATCAAAGAGAATTGGTCGAAGTCAAAAAACGAAGATTCAACTTACGCTCGCACAGTTGCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

96

Amino Acids

10.85

Weight (kDa)

7.72

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 219
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	37, 85, 261
AloI	GAACNNNNNNTCC	4 cut(s)	86, 118, 192, 224
AluBI	AGCT	2 cut(s)	182, 215
AluI	AGCT	2 cut(s)	182, 215
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	8, 182
ApoI	RAATTY	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	20, 169
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	5, 140
BfmI	CTRYAG	2 cut(s)	114, 183
BisI	GCNGC	2 cut(s)	9, 183
BlsI	GCNGC	2 cut(s)	10, 184
BmtI	GCTAGC	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	20, 169
BsiHKAI	GWGCWC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	195, 222
BspACI	CCGC	2 cut(s)	77, 219
BspMAI	CTGCAG	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	195, 222
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	6, 217, 271
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	198, 225
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	195, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	114, 183
BstV1I	GCAGC	2 cut(s)	20, 169
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	3 cut(s)	6, 217, 271
CseI	GACGC	1 cut(s)	35
CviJI	RGCY	2 cut(s)	182, 215
CviKI_1	RGCY	2 cut(s)	182, 215
DpnI	GATC	2 cut(s)	197, 224
DpnII	GATC	2 cut(s)	195, 222
EciI	GGCGGA	1 cut(s)	92
FaiI	YATR	3 cut(s)	20, 46, 116
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	9, 183
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	9, 183
FspBI	CTAG	2 cut(s)	5, 140
GluI	GCNGC	2 cut(s)	9, 183
HgaI	GACGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	189, 257
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	140, 193
Hpy8I	GTNNAC	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	130, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	195, 222
LpnPI	CCDG	3 cut(s)	155, 171, 206
Lsp1109I	GCAGC	2 cut(s)	20, 169
MaeI	CTAG	2 cut(s)	5, 140
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	197, 224
MboI	GATC	2 cut(s)	195, 222
MboII	GAAGA	2 cut(s)	25, 266
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	14, 232
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	195, 222
NheI	GCTAGC	1 cut(s)	4
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	10, 184
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	187
SatI	GCNGC	2 cut(s)	9, 183
Sau3AI	GATC	2 cut(s)	195, 222
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	92, 184, 217
SfcI	CTRYAG	2 cut(s)	114, 183
Sse9I	AATT	2 cut(s)	14, 232
SsiI	CCGC	2 cut(s)	77, 219
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	2 cut(s)	5, 140
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	198, 239
TasI	AATT	2 cut(s)	14, 232
TfiI	GAWTC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	8, 182
TspDTI	ATGAA	1 cut(s)	113
XapI	RAATTY	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	2 cut(s)	5, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.