Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

53209612 .. 53211318

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTTGGAGCACACAACCGACACCTTCTTTTATTCTCAAGATGAGACCAAGCTACAAGCACAGAAAACAGAGATATAGCTCAATCTCTCTCTTGAATATTATGGGATCTTTGGGACTTGACAATGAAAATTTAGGAACAGATGTTTACTTCTCTTTGGGGCTCAAACAATCAGGCAAAGGAGCTATGAAGTTTCCTCCCCGGGTTCTATCACCGCTCTCTTCACTTCTTGAGAGATCTGTTCAGAGCAATGAGATGCATATGGAGGCAGCAGAAATCAAGGAAGTTACAATATTTCATGGTTTAAGAGCACCCCCTTTGAGCATTCGACAATACATTGATCGCGTTTTTAAGTACTCTGGCTGTAGCCCTTCATGTTTTGTTGTTGCCAAGATCTATGTGGATAGATATCTTCAGTCAACACAAGTGCATTTGACTTCTTTCAATGTTCACCGACTTCTGATAACAAGTGTGATGCTGGCAGCAAAATTTATTGATGATGCATTCTTTAACAATGCATACTATGCCAAAGTGGGAGGAGTCAGCACAGCAGAGTTGAATAGGTTGGAGATGAAGTTTTTGTTTACTATAGATTTCAGACTTCAAGTTAGTATAGACACATTCAAGAAATACTGTTCTCAGCTAGAAAAGGAAGATGCAGTACACCAGATTGAACGTTCAATCCAAGCTTGTGGTGTCAAGGAGGATGAGATTGTCATATCCTCCTCTCAACGCATGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

248

Amino Acids

28.2

Weight (kDa)

9.2

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	86 - 201	1.9e-36	Cyclin
Cyclin_N	PF00134	111 - 201	1.4e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	217
AccII	CGCG	1 cut(s)	345
AciI	CCGC	1 cut(s)	215
AclI	AACGTT	1 cut(s)	676
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	130, 488
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	356, 663
AgsI	TTSAA	7 cut(s)	97, 445, 559, 605, 625, 674, 681
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	5 cut(s)	54, 81, 185, 643, 689
AluI	AGCT	5 cut(s)	54, 81, 185, 643, 689
Alw21I	GWGCWC	2 cut(s)	14, 313
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	269, 482
ApoI	RAATTY	2 cut(s)	130, 488
AsuC2I	CCSGG	2 cut(s)	202, 203
AsuHPI	GGTGA	2 cut(s)	204, 443
AvaI	CYCGRG	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	165
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
Bbv12I	GWGCWC	2 cut(s)	14, 313
BbvI	GCAGC	2 cut(s)	281, 494
BcnI	CCSGG	2 cut(s)	202, 203
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	2 cut(s)	364, 588
BglII	AGATCT	2 cut(s)	236, 393
BisI	GCNGC	2 cut(s)	270, 483
BlsI	GCNGC	2 cut(s)	271, 484
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	2 cut(s)	202, 203
BmeT110I	CYCGRG	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	202, 203
BmsI	GCATC	4 cut(s)	246, 465, 490, 646
BpuEI	CTTGAG	2 cut(s)	23, 251
BpuMI	CCSGG	2 cut(s)	202, 203
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	200, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	200, 201
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	653
BseRI	GAGGAG	2 cut(s)	552, 715
BseXI	GCAGC	2 cut(s)	281, 494
Bsh1236I	CGCG	1 cut(s)	345
BsiHKAI	GWGCWC	2 cut(s)	14, 313
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	2 cut(s)	324, 503
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	14, 165, 313
Bsp143I	GATC	4 cut(s)	107, 236, 340, 393
BspACI	CCGC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	345
BspPI	GGATC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	200, 201
BssMI	GATC	4 cut(s)	107, 236, 340, 393
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	4 cut(s)	110, 239, 343, 396
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	4 cut(s)	107, 236, 340, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	200, 201
BstSFI	CTRYAG	2 cut(s)	364, 588
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	281, 494
BstX2I	RGATCY	3 cut(s)	107, 236, 393
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	3 cut(s)	107, 236, 393
BtsCI	GGATG	1 cut(s)	712
Cac8I	GCNNGC	1 cut(s)	480
Cfr9I	CCCGGG	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	355, 662
CviAII	CATG	4 cut(s)	299, 375, 736, 744
CviJI	RGCY	9 cut(s)	5, 54, 81, 163, 185, 363, 369, 643, 689
CviKI_1	RGCY	9 cut(s)	5, 54, 81, 163, 185, 363, 369, 643, 689
CviQI	GTAC	2 cut(s)	355, 662
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	4 cut(s)	109, 238, 342, 395
DpnII	GATC	4 cut(s)	107, 236, 340, 393
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	410
EcoT22I	ATGCAT	3 cut(s)	261, 505, 520
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	4 cut(s)	302, 378, 739, 747
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	298, 374, 735, 743
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	270, 483
FokI	GGATG	1 cut(s)	719
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	270, 483
FspBI	CTAG	1 cut(s)	644
GluI	GCNGC	2 cut(s)	270, 483
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	4 cut(s)	302, 378, 739, 747
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	1 cut(s)	540
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	2 cut(s)	204, 443
Hpy166II	GTNNAC	5 cut(s)	148, 420, 451, 585, 664
Hpy188I	TCNGA	3 cut(s)	246, 462, 599
Hpy188III	TCNNGA	4 cut(s)	40, 94, 230, 625
Hpy8I	GTNNAC	5 cut(s)	148, 420, 451, 585, 664
HpyAV	CCTTC	2 cut(s)	36, 381
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	5 cut(s)	259, 430, 503, 518, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	4 cut(s)	302, 378, 739, 747
Kzo9I	GATC	4 cut(s)	107, 236, 340, 393
LmnI	GCTCC	2 cut(s)	9, 182
LpnPI	CCDG	5 cut(s)	159, 215, 345, 464, 680
Lsp1109I	GCAGC	2 cut(s)	281, 494
LweI	GCATC	4 cut(s)	246, 465, 490, 646
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	109, 238, 342, 395
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	4 cut(s)	107, 236, 340, 393
MboII	GAAGA	3 cut(s)	213, 404, 665
MflI	RGATCY	3 cut(s)	107, 236, 393
MhlI	GDGCHC	3 cut(s)	14, 165, 313
MluCI	AATT	2 cut(s)	130, 488
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	6 cut(s)	207, 259, 530, 697, 733, 736
Mph1103I	ATGCAT	3 cut(s)	261, 505, 520
MseI	TTAA	3 cut(s)	305, 351, 510
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	202, 203
Mva1269I	GAATGC	2 cut(s)	324, 503
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	2 cut(s)	202, 203
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	4 cut(s)	107, 236, 340, 393
NlaIII	CATG	4 cut(s)	302, 378, 739, 747
NsiI	ATGCAT	3 cut(s)	261, 505, 520
PctI	GAATGC	2 cut(s)	324, 503
PkrI	GCNGC	2 cut(s)	271, 484
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	107, 236, 393
RsaI	GTAC	2 cut(s)	356, 663
RsaNI	GTAC	2 cut(s)	355, 662
SaqAI	TTAA	3 cut(s)	305, 351, 510
SatI	GCNGC	2 cut(s)	270, 483
Sau3AI	GATC	4 cut(s)	107, 236, 340, 393
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	2 cut(s)	202, 203
SduI	GDGCHC	3 cut(s)	14, 165, 313
SetI	ASST	8 cut(s)	28, 56, 83, 187, 566, 645, 679, 691
SfaNI	GCATC	4 cut(s)	246, 465, 490, 646
SfcI	CTRYAG	2 cut(s)	364, 588
SmaI	CCCGGG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	38, 230
SmoI	CTYRAG	2 cut(s)	38, 230
Sse9I	AATT	2 cut(s)	130, 488
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	2 cut(s)	100, 294
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	200, 201
TaaI	ACNGT	1 cut(s)	635
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	130, 488
TatI	WGTACW	2 cut(s)	354, 661
Tru1I	TTAA	3 cut(s)	305, 351, 510
Tru9I	TTAA	3 cut(s)	305, 351, 510
TseI	GCWGC	2 cut(s)	269, 482
TspDTI	ATGAA	5 cut(s)	141, 203, 287, 363, 587
TspMI	CCCGGG	1 cut(s)	201
XapI	RAATTY	2 cut(s)	130, 488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	201
XspI	CTAG	1 cut(s)	644
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	3 cut(s)	261, 505, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.