Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Forward (+)

15904802 .. 15905810

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGATTCTTCCCCGGGTTCTGTCACCGCTCTCTTCACTTCTTGAGAGATCTGTTCAGAGCAATGAGATGCATATGGAGGCAGCAGAAATCAAGGAAATCTATGTGGATAGATATCTTCAGTCAACACAAGTGCATTTGACTTCTTTCAATGTTCACCGGCTTCTGATAACAAGTGTGATGCTGGCAGCAAAATTTATTGATGATGCATTCTTTAACAATGCATACTATGCCAAAGTGGGAGGAGTCAGCACAGCAGAGTTGAATAGGTTGGAGATGAAGTTTTTGTTTACCATAGATTTCAGACTTCAAGTTAGTATAGACACATTCAAGAAATACTGTTCTCAGCTAGAAAAGGAAGATGCAGTACACCAGATTGAGCGTTCAATCCAAGCTTGTGGTGTCAAGGAGGATGAGATTGTCATATCCTCCTCTCAACGCATGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

6.08

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	15 - 103	7.2e-08	Cyclin, N-terminal domain
Cyclin	PF08613	34 - 103	4.9e-24	Cyclin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	151, 265, 311, 331, 387
AluBI	AGCT	2 cut(s)	349, 395
AluI	AGCT	2 cut(s)	349, 395
Ama87I	CYCGRG	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	83, 188
ApoI	RAATTY	1 cut(s)	194
AsuC2I	CCSGG	2 cut(s)	16, 17
AsuHPI	GGTGA	2 cut(s)	18, 149
AvaI	CYCGRG	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbvI	GCAGC	2 cut(s)	95, 200
BcnI	CCSGG	2 cut(s)	16, 17
BfaI	CTAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	2 cut(s)	84, 189
BlsI	GCNGC	2 cut(s)	85, 190
Bme1390I	CCNGG	2 cut(s)	16, 17
BmeT110I	CYCGRG	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	16, 17
BmsI	GCATC	4 cut(s)	60, 171, 196, 352
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	16, 17
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	14, 15
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bse118I	RCCGGY	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	14, 15
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	359
BseRI	GAGGAG	2 cut(s)	258, 421
BseXI	GCAGC	2 cut(s)	95, 200
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	16, 160
BsmI	GAATGC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	14, 15
BssMI	GATC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	14, 15
BstV1I	GCAGC	2 cut(s)	95, 200
BstX2I	RGATCY	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	159
Cfr9I	CCCGGG	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	442, 450
CviJI	RGCY	3 cut(s)	163, 349, 395
CviKI_1	RGCY	3 cut(s)	163, 349, 395
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	116
EcoT22I	ATGCAT	3 cut(s)	75, 211, 226
FaeI	CATG	2 cut(s)	445, 453
FatI	CATG	2 cut(s)	441, 449
FauNDI	CATATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	84, 189
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	84, 189
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	2 cut(s)	84, 189
HapII	CCGG	2 cut(s)	16, 160
Hin1II	CATG	2 cut(s)	445, 453
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	2 cut(s)	7, 246
HpaII	CCGG	2 cut(s)	16, 160
HphI	GGTGA	2 cut(s)	18, 149
Hpy166II	GTNNAC	4 cut(s)	126, 157, 291, 370
Hpy188I	TCNGA	3 cut(s)	60, 168, 305
Hpy188III	TCNNGA	2 cut(s)	44, 331
Hpy8I	GTNNAC	4 cut(s)	126, 157, 291, 370
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	73, 136, 209, 224, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	445, 453
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	29, 170, 173, 386
Lsp1109I	GCAGC	2 cut(s)	95, 200
LweI	GCATC	4 cut(s)	60, 171, 196, 352
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	1 cut(s)	52
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	1 cut(s)	50
MboII	GAAGA	4 cut(s)	16, 27, 110, 371
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	73, 236, 403, 439, 442
Mph1103I	ATGCAT	3 cut(s)	75, 211, 226
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	16, 160
MspR9I	CCNGG	2 cut(s)	16, 17
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	16, 17
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	445, 453
NmuCI	GTSAC	1 cut(s)	24
NsiI	ATGCAT	3 cut(s)	75, 211, 226
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	85, 190
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	84, 189
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	16, 17
SetI	ASST	3 cut(s)	272, 351, 397
SfaNI	GCATC	4 cut(s)	60, 171, 196, 352
SmaI	CCCGGG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	14, 15
TaaI	ACNGT	1 cut(s)	341
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	83, 188
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	17, 293
TspMI	CCCGGG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	15
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	3 cut(s)	75, 211, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.