Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009918

Physical Location & Seq

Genomic Coordinates Reverse (-)

19300694 .. 19303096

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGTTCTTTGGGACTTGACAACGAGAATGTGGGAACAGATGTTTACTTCTCTTTGGGGCTTAAGCAATCAGGGAAAGTAGCTACAAAGATTCCTCCCCGGGTTCTGTCACCGCTCTCATCACTTCTTGAGAGATCCGTTCAGAGCAATGAGATGCATATGGAGGCAACAGAAATCAAGGAAGTAACAATATTTCATGGTTTGAGAGCACCCCCTTTGAGCATTCGACAGTACATTGATCGCGTTTTCAAGTACTCTGGCTGTAGCCCTTCTTGCTTTGTTGTTGCCAAGATCTATGTGGATAGATATCTTCAGTCAACCCAAGTGCATTTGACTTCTTTCAATGTTCACCGGCTTCTAATCACAAGTGTGATGCTAGCAGCGAAATTTATTGATGATGCTTTCTTCAACAATGCATACTATGCCAAAGTGGGAGGAGTCAGCACAGCAGAGTTGAATAGGTTGGAGATGAAGTTTTTGTTTTCTATAGACTTCAGACTTCAAGTTAGTATAGACACATTCAAGAAATATTGTTCTCATCTAGAAAAGGAAGCTGCAGTACACCAGATTGAACGTTCGATCCAAGCTTGTGGTATCAAGGAGGATGAGATTGTCATAGCCTCCTCCCAGCGCATGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

215

Amino Acids

24.1

Weight (kDa)

8.3

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	54 - 167	1.7e-36	Cyclin
Cyclin_N	PF00134	77 - 167	2.6e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63120 AT3G63120
fragaria_vesca	FvH4_2g23550
malus_domestica	MD03G1264800.v1.1 MD11G1285000.v1.1
prunus_persica	Prupe.8G240800_v2.0.a1 Prupe.8G240800_v2.0.a1
pyrus_communis	pycom03g21200 pycom11g25260
rosa_chinensis	RchiOBHm_Chr6g0291021
rosa_laevigata	RLG00000012154
rosa_multiflora	Rmu_sc0024447.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176450
rosa_rugosa	Rorug06G0217000 Rorug06G0217000 Rorug06G0217000
rosa_samantha	Rh6AG327000 Rh6BG334500 Rh6CG340700 Rh6DG328000
rosa_wichuraiana	Rw6G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	113
AclI	AACGTT	1 cut(s)	574
AclWI	GGATC	2 cut(s)	129, 574
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	296, 478
AfaI	GTAC	3 cut(s)	233, 254, 561
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	7 cut(s)	250, 343, 409, 457, 503, 523, 572
AleI	CACNNNNGTG	1 cut(s)	368
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	83, 554, 587
AluI	AGCT	3 cut(s)	83, 554, 587
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	129, 574
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	380, 554
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	633
AsuC2I	CCSGG	2 cut(s)	100, 101
AsuHPI	GGTGA	2 cut(s)	102, 341
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	392, 541
BcnI	CCSGG	2 cut(s)	100, 101
BfaI	CTAG	2 cut(s)	377, 542
BfmI	CTRYAG	3 cut(s)	262, 486, 555
BfrI	CTTAAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	2 cut(s)	381, 555
BlsI	GCNGC	2 cut(s)	382, 556
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	100, 101
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	100, 101
BmsI	GCATC	3 cut(s)	144, 363, 388
BmtI	GCTAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	100, 101
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	98, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bse118I	RCCGGY	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	98, 99
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	450, 613
BseXI	GCAGC	2 cut(s)	392, 541
BseYI	CCCAGC	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	100, 352
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	134, 238, 291, 579
BspACI	CCGC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	129, 574
BspTI	CTTAAG	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	98, 99
BssMI	GATC	4 cut(s)	134, 238, 291, 579
Bst4CI	ACNGT	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	4 cut(s)	137, 241, 294, 582
BstMBI	GATC	4 cut(s)	134, 238, 291, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 422
BstSCI	CCNGG	2 cut(s)	98, 99
BstSFI	CTRYAG	3 cut(s)	262, 486, 555
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	392, 541
BstX2I	RGATCY	2 cut(s)	134, 291
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	2 cut(s)	134, 291
BtsCI	GGATG	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	232, 253, 560
CviAII	CATG	3 cut(s)	197, 634, 642
CviJI	RGCY	8 cut(s)	61, 83, 261, 267, 355, 554, 587, 620
CviKI_1	RGCY	8 cut(s)	61, 83, 261, 267, 355, 554, 587, 620
CviQI	GTAC	3 cut(s)	232, 253, 560
DpnI	GATC	4 cut(s)	136, 240, 293, 581
DpnII	GATC	4 cut(s)	134, 238, 291, 579
Eco32I	GATATC	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	296, 478
Eco88I	CYCGRG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	308
EcoT22I	ATGCAT	2 cut(s)	159, 418
FaeI	CATG	3 cut(s)	200, 637, 645
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	196, 633, 641
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	381, 555
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	381, 555
FspBI	CTAG	2 cut(s)	377, 542
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	381, 555
GsaI	CCCAGC	1 cut(s)	631
HapII	CCGG	2 cut(s)	100, 352
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	3 cut(s)	200, 637, 645
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	2 cut(s)	91, 438
HpaII	CCGG	2 cut(s)	100, 352
HphI	GGTGA	2 cut(s)	102, 341
Hpy166II	GTNNAC	4 cut(s)	46, 318, 349, 562
Hpy188I	TCNGA	2 cut(s)	144, 497
Hpy188III	TCNNGA	3 cut(s)	128, 523, 542
Hpy8I	GTNNAC	4 cut(s)	46, 318, 349, 562
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	4 cut(s)	157, 328, 416, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 422
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	3 cut(s)	200, 637, 645
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	134, 238, 291, 579
LpnPI	CCDG	6 cut(s)	57, 113, 243, 365, 578, 641
Lsp1109I	GCAGC	2 cut(s)	392, 541
LweI	GCATC	3 cut(s)	144, 363, 388
MaeI	CTAG	2 cut(s)	377, 542
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	108, 184
MalI	GATC	4 cut(s)	136, 240, 293, 581
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	4 cut(s)	134, 238, 291, 579
MboII	GAAGA	2 cut(s)	302, 397
MflI	RGATCY	2 cut(s)	134, 291
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	105, 157, 428, 595, 631, 634
Mph1103I	ATGCAT	2 cut(s)	159, 418
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	2 cut(s)	100, 352
MspR9I	CCNGG	2 cut(s)	100, 101
Mva1269I	GAATGC	1 cut(s)	222
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	273, 422
NciI	CCSGG	2 cut(s)	100, 101
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	4 cut(s)	134, 238, 291, 579
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	200, 637, 645
NmuCI	GTSAC	1 cut(s)	108
NsiI	ATGCAT	2 cut(s)	159, 418
OliI	CACNNNNGTG	1 cut(s)	368
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	382, 556
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	134, 291
RsaI	GTAC	3 cut(s)	233, 254, 561
RsaNI	GTAC	3 cut(s)	232, 253, 560
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	381, 555
Sau3AI	GATC	4 cut(s)	134, 238, 291, 579
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	100, 101
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	5 cut(s)	85, 464, 556, 577, 589
SfaNI	GCATC	3 cut(s)	144, 363, 388
SfcI	CTRYAG	3 cut(s)	262, 486, 555
SmaI	CCCGGG	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	62, 128
SmoI	CTYRAG	2 cut(s)	62, 128
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	2 cut(s)	192, 530
SspMI	CTAG	2 cut(s)	377, 542
StyD4I	CCNGG	2 cut(s)	98, 99
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	226, 578
TasI	AATT	1 cut(s)	386
TatI	WGTACW	3 cut(s)	231, 252, 559
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	380, 554
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	185, 485
TspGWI	ACGGA	1 cut(s)	127
TspMI	CCCGGG	1 cut(s)	99
Vha464I	CTTAAG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	99
XspI	CTAG	2 cut(s)	377, 542
ZrmI	AGTACT	1 cut(s)	254
Zsp2I	ATGCAT	2 cut(s)	159, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.