Prupe.8G240800_v2.0.a1

cyclin-P3-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0009918
Physical Location & Seq
Reverse (-)
21110532 .. 21113091
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G240800.1

Sequence Viewer

Length: 669 bp
ATGGTGAGGTCAAATATGGGAACTTTGGCACTTGACAATGAAAACGTAGGCTCGGATGTTTACTGCCAATTGGGGCTAAGGGAATCGGCAAAAGGAGTTATGAAAATCCCTCGGGTTCTGTCACCTCTCTCATCACTTCTTGAGAGATGTGTTCAAAAGAATGAGATGCTATTGGAGGCAACGGACATTAAAGAAGTCATGACCATATTTCATGGTTTACGAGCACCCACTTTGAGCATTCGGCAATATATTGATCGCATCTTTAAATACTCTGGCTGTAGCCCATCATGCTTCGTTGTTGCACAGATCTATGTGGACAGATTTATCCAGTGCACAGAAGTCCGTTTAACTTCTTTCAATATTCACCGGCTTCTGATAACAGGTGTAATGCTAGCAGCGAAGTTTATTGATGACGCATTCTTCAACAATGCATACTATGCCAAAGTAGGAGGAGTGAGCACAAGTGAGTTGAATAGGTTGGAAATGAAGTTCTTGTTTACTATAGATTTCAGGCTTCAAGTTAGCATAGAGACATTTAAGAGATATTGTTCTCAGTTGGAAAAGGAAGCTGCAGGGCTCCAGATTGAACGTTTGATCCAAGCCTGTGGGATCAAAGAGAATTGGTCCAACAAAGACGATTCAACTTGTGCTCCTACAGTTGCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

223

Amino Acids

25.14

Weight (kDa)

8.39

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 589
AclWI GGATC 2 cut(s) 589, 617
AgsI TTSAA 7 cut(s) 155, 358, 424, 472, 518, 587, 642
AloI GAACNNNNNNTCC 4 cut(s) 473, 505, 579, 611
AluBI AGCT 1 cut(s) 569
AluI AGCT 1 cut(s) 569
Alw21I GWGCWC 4 cut(s) 226, 335, 461, 652
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 331
AlwI GGATC 2 cut(s) 589, 617
Ama87I CYCGRG 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 395, 569
AspS9I GGNCC 1 cut(s) 624
AsuHPI GGTGA 3 cut(s) 16, 114, 356
AsuNHI GCTAGC 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 579
Bbv12I GWGCWC 4 cut(s) 226, 335, 461, 652
BbvI GCAGC 2 cut(s) 407, 556
BccI CCATC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 4 cut(s) 277, 501, 570, 654
BglII AGATCT 1 cut(s) 306
BisI GCNGC 2 cut(s) 396, 570
BlsI GCNGC 2 cut(s) 397, 571
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 2 cut(s) 156, 267
BmtI GCTAGC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 2 cut(s) 407, 556
BsiHKAI GWGCWC 4 cut(s) 226, 335, 461, 652
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 524
BsmI GAATGC 2 cut(s) 237, 416
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 5 cut(s) 226, 335, 461, 579, 652
Bsp143I GATC 4 cut(s) 253, 306, 594, 609
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 578
BspMAI CTGCAG 1 cut(s) 574
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 2 cut(s) 589, 617
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 4 cut(s) 253, 306, 594, 609
Bst4CI ACNGT 1 cut(s) 658
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 77, 552
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 4 cut(s) 256, 309, 597, 612
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 4 cut(s) 253, 306, 594, 609
BstMWI GCNNNNNNNGC 2 cut(s) 288, 437
BstSFI CTRYAG 4 cut(s) 277, 501, 570, 654
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 407, 556
BstX2I RGATCY 1 cut(s) 306
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 1 cut(s) 306
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 624
CseI GACGC 1 cut(s) 422
CviAII CATG 3 cut(s) 199, 212, 288
CviJI RGCY 9 cut(s) 51, 76, 276, 282, 370, 514, 569, 577, 602
CviKI_1 RGCY 9 cut(s) 51, 76, 276, 282, 370, 514, 569, 577, 602
DdeI CTNAG 2 cut(s) 77, 552
DpnI GATC 4 cut(s) 255, 308, 596, 611
DpnII GATC 4 cut(s) 253, 306, 594, 609
DraI TTTAAA 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 3 cut(s) 202, 215, 291
FatI CATG 3 cut(s) 198, 211, 287
Fnu4HI GCNGC 2 cut(s) 396, 570
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 396, 570
FspBI CTAG 1 cut(s) 392
GluI GCNGC 2 cut(s) 396, 570
GsuI CTGGAG 1 cut(s) 563
HapII CCGG 1 cut(s) 367
HgaI GACGC 1 cut(s) 422
Hin1II CATG 3 cut(s) 202, 215, 291
HinfI GANTC 2 cut(s) 83, 638
HpaII CCGG 1 cut(s) 367
HphI GGTGA 3 cut(s) 16, 114, 356
Hpy166II GTNNAC 5 cut(s) 61, 218, 316, 333, 498
Hpy188I TCNGA 2 cut(s) 55, 375
Hpy188III TCNNGA 3 cut(s) 140, 199, 580
Hpy8I GTNNAC 5 cut(s) 61, 218, 316, 333, 498
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4IV ACGT 2 cut(s) 45, 589
HpyCH4V TGCA 5 cut(s) 302, 333, 431, 572, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 437
HpyF3I CTNAG 2 cut(s) 77, 552
HpySE526I ACGT 2 cut(s) 45, 589
Hsp92II CATG 3 cut(s) 202, 215, 291
Kzo9I GATC 4 cut(s) 253, 306, 594, 609
LmnI GCTCC 2 cut(s) 582, 655
LpnPI CCDG 8 cut(s) 258, 341, 366, 380, 496, 558, 593, 616
Lsp1109I GCAGC 2 cut(s) 407, 556
LweI GCATC 2 cut(s) 156, 267
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 45, 589
MaeIII GTNAC 1 cut(s) 120
MalI GATC 4 cut(s) 255, 308, 596, 611
MboI GATC 4 cut(s) 253, 306, 594, 609
MboII GAAGA 1 cut(s) 412
MfeI CAATTG 1 cut(s) 68
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 5 cut(s) 226, 335, 461, 579, 652
MluCI AATT 2 cut(s) 68, 619
MmeI TCCRAC 3 cut(s) 459, 537, 651
MnlI CCTC 4 cut(s) 120, 135, 169, 443
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 4 cut(s) 189, 264, 347, 537
MspI CCGG 1 cut(s) 367
MunI CAATTG 1 cut(s) 68
Mva1269I GAATGC 2 cut(s) 237, 416
MwoI GCNNNNNNNGC 2 cut(s) 288, 437
NdeII GATC 4 cut(s) 253, 306, 594, 609
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 3 cut(s) 202, 215, 291
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 433
PagI TCATGA 1 cut(s) 198
PctI GAATGC 2 cut(s) 237, 416
PfeI GAWTC 2 cut(s) 83, 638
PkrI GCNGC 2 cut(s) 397, 571
Psp1406I AACGTT 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 578
PspPI GGNCC 1 cut(s) 624
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 306
SaqAI TTAA 4 cut(s) 189, 264, 347, 537
SatI GCNGC 2 cut(s) 396, 570
Sau3AI GATC 4 cut(s) 253, 306, 594, 609
Sau96I GGNCC 1 cut(s) 624
SduI GDGCHC 5 cut(s) 226, 335, 461, 579, 652
SetI ASST 7 cut(s) 11, 48, 127, 385, 479, 571, 592
SfaNI GCATC 2 cut(s) 156, 267
SfcI CTRYAG 4 cut(s) 277, 501, 570, 654
SinI GGWCC 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 68, 619
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 658
TaiI ACGT 2 cut(s) 48, 592
TasI AATT 2 cut(s) 68, 619
TfiI GAWTC 2 cut(s) 83, 638
Tru1I TTAA 4 cut(s) 189, 264, 347, 537
Tru9I TTAA 4 cut(s) 189, 264, 347, 537
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 395, 569
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 4 cut(s) 54, 116, 200, 500
TspGWI ACGGA 2 cut(s) 197, 332
TspRI CASTG 1 cut(s) 335
VneI GTGCAC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 624
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.