Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

23456055 .. 23458732

Gene Structure 2678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATGGAGATAATAGACCAGTGGAAGATGCTCATTACACGGAGACAGGTTTCCCTTATGCTGCTACTGGAAGTTACATGGACTTTTATGGTGGTGCGGCTCAGGGGCCTCTTAACTACGATCATGCCGCAACTATGCATCCTCAGGACAATCTGTACTGGACCATGAATACCAATGCATACAAGTTTGGGTTTTCAGGATCAGATAATGCTTCTTTCTATGGTTCATATGACATGAACGATCATTTATCGAGGATGTCCATAGGGAGAACAAATTGGGACTATCATCCCATGGTGAACGTTGCTGATGATCCTGAAAACACAGTTGCACGTTCCGTCCAAATCGGAGACACAGATGAGCACTCTGAAGCTGAAGAATGCATTGCAAATGAGCATGATCCCGACAGTCCTCAGGTATCCTGGCAAGATGACATTGATCCTGATACAATGACCTATGAGGAATTAGTAGAGCTGGGGGAAGCAGTAGGAACAGAAAGCAGGGGGTTGTCTCAGGAACTCATAGAAACGCTTCCCACTAAAAAGTATAAGTTTGGGAGCATCTTCTCCAGGAAAAGAGCTGGGGAGAGGTGTGTGATATGCCAGCTCAAGTACAAGATAGGGGAGAGGCAAATGAATCTGCCGTGCAAGCATGTGTATCATTCTGAATGCATTTCCAAATGGCTAAGCATCAACAAGGTTTGCCCGGTGTGTAACAGCGAGGTCTTTGGGGAGCCCAGCATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

248

Amino Acids

27.98

Weight (kDa)

4.71

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	189 - 238	1.8e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	196 - 238	9.4e-13	Ring finger domain
zf-C3HC4_2	PF13923	196 - 237	6.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	197 - 224	3.7e-07	RING-like zinc finger
zf-C3HC4	PF00097	197 - 237	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 129
AclI	AACGTT	1 cut(s)	300
AclWI	GGATC	4 cut(s)	208, 305, 392, 431
AcuI	CTGAAG	2 cut(s)	387, 393
AfaI	GTAC	2 cut(s)	158, 611
AjnI	CCWGG	2 cut(s)	419, 566
AluBI	AGCT	4 cut(s)	371, 472, 578, 604
AluI	AGCT	4 cut(s)	371, 472, 578, 604
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	38, 342, 513
AlwI	GGATC	4 cut(s)	208, 305, 392, 431
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	107, 162
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	162
AxyI	CCTNAGG	2 cut(s)	144, 411
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	625
BciT130I	CCWGG	2 cut(s)	421, 568
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	3 cut(s)	38, 342, 513
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	3 cut(s)	63, 99, 129
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	3 cut(s)	64, 100, 130
Bme1390I	CCNGG	3 cut(s)	421, 568, 704
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	107, 162
BmiI	GGNNCC	2 cut(s)	108, 732
BmrFI	CCNGG	3 cut(s)	421, 568, 704
BmsI	GCATC	4 cut(s)	19, 148, 567, 696
BpmI	CTGGAG	1 cut(s)	550
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	291
Bse1I	ACTGG	3 cut(s)	20, 73, 164
Bse21I	CCTNAGG	2 cut(s)	144, 411
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	421, 568
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	139, 261, 286
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	4 cut(s)	116, 158, 425, 524
BseNI	ACTGG	3 cut(s)	20, 73, 164
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	3 cut(s)	472, 578, 734
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	293
BsmAI	GTCTC	3 cut(s)	38, 342, 513
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	3 cut(s)	383, 671, 738
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	363, 735
Bsp143I	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	2 cut(s)	98, 129
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	4 cut(s)	115, 157, 424, 523
BspLI	GGNNCC	2 cut(s)	108, 732
BspPI	GGATC	4 cut(s)	208, 305, 392, 431
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	20, 73, 164
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	421, 568
Bst4CI	ACNGT	2 cut(s)	325, 407
BstC8I	GCNNGC	2 cut(s)	602, 647
BstDEI	CTNAG	5 cut(s)	102, 144, 411, 510, 683
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	139, 261, 286
BstKTI	GATC	6 cut(s)	124, 203, 244, 313, 400, 439
BstMAI	GTCTC	3 cut(s)	38, 342, 513
BstMBI	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNI	CCWGG	2 cut(s)	421, 568
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	3 cut(s)	419, 566, 702
BstV1I	GCAGC	1 cut(s)	49
Bsu36I	CCTNAGG	2 cut(s)	144, 411
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	139, 261, 286
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	602, 647
Cfr13I	GGNCC	2 cut(s)	107, 162
Csp6I	GTAC	2 cut(s)	157, 610
CviAII	CATG	7 cut(s)	79, 125, 166, 235, 292, 395, 650
CviJI	RGCY	8 cut(s)	101, 109, 371, 472, 578, 604, 682, 733
CviKI_1	RGCY	8 cut(s)	101, 109, 371, 472, 578, 604, 682, 733
CviQI	GTAC	2 cut(s)	157, 610
DdeI	CTNAG	5 cut(s)	102, 144, 411, 510, 683
DpnI	GATC	6 cut(s)	123, 202, 243, 312, 399, 438
DpnII	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	387, 393
Eco81I	CCTNAGG	2 cut(s)	144, 411
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	419, 566
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	4 cut(s)	141, 181, 383, 671
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	7 cut(s)	82, 128, 169, 238, 295, 398, 653
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	7 cut(s)	78, 124, 165, 234, 291, 394, 649
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	63, 99, 129
FokI	GGATG	3 cut(s)	126, 268, 273
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	3 cut(s)	63, 99, 129
GluI	GCNGC	3 cut(s)	63, 99, 129
GsaI	CCCAGC	3 cut(s)	476, 582, 738
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	704
Hin1II	CATG	7 cut(s)	82, 128, 169, 238, 295, 398, 653
HinfI	GANTC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	205, 347, 367, 664
Hpy188III	TCNNGA	6 cut(s)	146, 198, 314, 401, 440, 512
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	325, 407
HpyCH4IV	ACGT	2 cut(s)	300, 331
HpyCH4V	TGCA	7 cut(s)	139, 179, 329, 381, 386, 645, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpyF3I	CTNAG	5 cut(s)	102, 144, 411, 510, 683
HpySE526I	ACGT	2 cut(s)	300, 331
Hsp92II	CATG	7 cut(s)	82, 128, 169, 238, 295, 398, 653
Kzo9I	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
LmnI	GCTCC	2 cut(s)	555, 730
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	19, 148, 567, 696
MaeII	ACGT	2 cut(s)	300, 331
MaeIII	GTNAC	2 cut(s)	74, 710
MalI	GATC	6 cut(s)	123, 202, 243, 312, 399, 438
MboI	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
MboII	GAAGA	3 cut(s)	38, 386, 553
MhlI	GDGCHC	2 cut(s)	363, 735
MluCI	AATT	2 cut(s)	274, 461
MnlI	CCTC	8 cut(s)	120, 153, 246, 420, 451, 579, 618, 712
Mph1103I	ATGCAT	4 cut(s)	141, 181, 383, 671
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	1 cut(s)	114
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	3 cut(s)	421, 568, 704
Mva1269I	GAATGC	3 cut(s)	383, 671, 738
MvaI	CCWGG	2 cut(s)	421, 568
MwoI	GCNNNNNNNGC	1 cut(s)	646
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
NlaIII	CATG	7 cut(s)	82, 128, 169, 238, 295, 398, 653
NlaIV	GGNNCC	2 cut(s)	108, 732
NsiI	ATGCAT	4 cut(s)	141, 181, 383, 671
NspI	RCATGY	1 cut(s)	653
PctI	GAATGC	3 cut(s)	383, 671, 738
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	64, 100, 130
Psp1406I	AACGTT	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	419, 566
PspFI	CCCAGC	3 cut(s)	472, 578, 734
PspGI	CCWGG	2 cut(s)	419, 566
PspN4I	GGNNCC	2 cut(s)	108, 732
PspPI	GGNCC	2 cut(s)	107, 162
RsaI	GTAC	2 cut(s)	158, 611
RsaNI	GTAC	2 cut(s)	157, 610
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	63, 99, 129
Sau3AI	GATC	6 cut(s)	121, 200, 241, 310, 397, 436
Sau96I	GGNCC	2 cut(s)	107, 162
ScrFI	CCNGG	3 cut(s)	421, 568, 704
SduI	GDGCHC	2 cut(s)	363, 735
SfaNI	GCATC	4 cut(s)	19, 148, 567, 696
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	2 cut(s)	274, 461
SsiI	CCGC	2 cut(s)	98, 129
StyD4I	CCNGG	3 cut(s)	419, 566, 702
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	325, 407
TaiI	ACGT	2 cut(s)	303, 334
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	274, 461
TatI	WGTACW	2 cut(s)	156, 609
TauI	GCSGC	2 cut(s)	101, 131
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	6 cut(s)	17, 182, 216, 251, 647, 731
TspGWI	ACGGA	2 cut(s)	56, 325
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	528
Zsp2I	ATGCAT	4 cut(s)	141, 181, 383, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.