Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

2306240 .. 2309459

Gene Structure 3220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG014700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGGTGCATTACATAGACACCGGCTTCCCTTACACGGCTACTGAAAGCTTTATGGACTTCTTTGAAGGTCTTACTCATGCCCCCGTGAACTATGGTCACGCCATGCCCGAAGCTGCATACTGGTCAATGAATATGCACTCCTACAAATTTGGACTCTCTGGTCCGGGGAATACGTCTTATTATGGTCCTTACGAGGTAAATACTCATTTTCCGAGAATGGATATGAGCAGGAGGGCTTGGGAATATCCTTTAATGACAAATTCAGAAGAGCCTGCTACAACTGCTTCGCAACCAGAAGAAACTGTAGTCGAGGAAGTTGATGTCATAACCGAAGAATCCATTCCAAATGAGCAAAACACAAATACTTCTCAGGCGGAATGGGAAGAGAACATCGATCCTGATAACATGACATATGAGGAATTACTCGATTTGGGTGAGGCTGTTGGTACTCAAAGCCGAGGGCTTTCCGACGAACTTATTAGCTTGCTTCCCACAACCAAATACAAGTGTGGAAGCTTTTTCTCAAGAAAGAAATCTGGAGAGAGATGTGTAATTTGCCAGGCGAGGTACAAAAGAGGAGCTCGACAAATGAAATTGCCCTGCAATCATTTTTACCATAGCGAATGCATCAGCAAATGGCTCGGCATCAACAAGATATGCCCAGTCTGCAACCTTGAGGTATTCGCCGAGGAATCAAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

26.9

Weight (kDa)

4.87

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	176 - 225	4.8e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	183 - 225	4.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	183 - 224	4.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	184 - 211	1.3e-06	RING-like zinc finger
zf-C3HC4	PF00097	184 - 224	3.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	149, 262
AfaI	GTAC	2 cut(s)	451, 572
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	5 cut(s)	51, 116, 486, 519, 584
AluI	AGCT	5 cut(s)	51, 116, 486, 519, 584
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	149, 262
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	164, 188
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	164, 188
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	168, 563
Bme18I	GGWCC	2 cut(s)	164, 188
BmgT120I	GGNCC	2 cut(s)	164, 188
BmrFI	CCNGG	2 cut(s)	168, 563
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	2 cut(s)	639, 657
BmuI	ACTGGG	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	511, 698
BpuMI	CCSGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	167, 460, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	128, 665
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	167, 460, 690
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	128, 665
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	24, 167
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	396
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	128, 665
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	167, 460, 690
BssMI	GATC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	264, 381
BstC8I	GCNNGC	2 cut(s)	276, 488
BstDEI	CTNAG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 669
BstNI	CCWGG	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	166, 561
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	276, 488
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	164, 188
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	450, 571
CviAII	CATG	3 cut(s)	80, 106, 409
CviQI	GTAC	2 cut(s)	450, 571
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	264, 381
EarI	CTCTTC	2 cut(s)	264, 381
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	164, 188
Eco53kI	GAGCTC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	586
FaeI	CATG	3 cut(s)	83, 109, 412
FatI	CATG	3 cut(s)	79, 105, 408
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	561
HapII	CCGG	2 cut(s)	24, 167
Hin1II	CATG	3 cut(s)	83, 109, 412
HindIII	AAGCTT	2 cut(s)	49, 517
HinfI	GANTC	3 cut(s)	156, 338, 695
HpaII	CCGG	2 cut(s)	24, 167
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	216, 268, 472
Hpy188III	TCNNGA	3 cut(s)	401, 528, 540
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	10, 119, 139, 606, 630, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 669
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	83, 109, 412
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	639, 657
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	4 cut(s)	281, 311, 347, 398
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	5 cut(s)	149, 262, 422, 555, 596
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	495
Mph1103I	ATGCAT	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	254, 706
MspI	CCGG	2 cut(s)	24, 167
MspR9I	CCNGG	2 cut(s)	168, 563
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	284, 669
NciI	CCSGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	3 cut(s)	83, 109, 412
NmeAIII	GCCGAG	2 cut(s)	485, 624
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	338, 695
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspPI	GGNCC	2 cut(s)	164, 188
RsaI	GTAC	2 cut(s)	451, 572
RsaNI	GTAC	2 cut(s)	450, 571
SacI	GAGCTC	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	254, 706
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	2 cut(s)	164, 188
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	168, 563
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	639, 657
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	164, 188
SmlI	CTYRAG	2 cut(s)	526, 677
SmoI	CTYRAG	2 cut(s)	526, 677
Sse9I	AATT	5 cut(s)	149, 262, 422, 555, 596
SsiI	CCGC	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	166, 561
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	312, 396, 429, 586
TasI	AATT	5 cut(s)	149, 262, 422, 555, 596
TfiI	GAWTC	2 cut(s)	338, 695
Tru1I	TTAA	2 cut(s)	254, 706
Tru9I	TTAA	2 cut(s)	254, 706
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	146, 608
VpaK11BI	GGWCC	2 cut(s)	164, 188
XapI	RAATTY	2 cut(s)	149, 262
XmnI	GAANNNNTTC	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.