Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

1375667 .. 1375897

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAAGAATTGAACAAATGGTTGTTAGAAAGGGAGCGTGAAAATATGGAAGAGCTCGAGCGGATTCAAGCTACAAACTCTCAAGCGGCTGCAATGGTGGCGCAATATCAATTATCGGAGACACCTAGAGGGCGTGGTTCAAGACCTGGCCGTGCCCCAAATGTCGAAAGACATAGAGAAGTCCGAGGTCATTTTCTCCTGGAGGATTATTTTGTCGAATGTCCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

76

Amino Acids

8.96

Weight (kDa)

5.38

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	2 cut(s)	61, 86
AcoI	YGGCCR	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	13, 68, 141
AjnI	CCWGG	2 cut(s)	145, 198
AluBI	AGCT	2 cut(s)	55, 71
AluI	AGCT	2 cut(s)	55, 71
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	147, 200
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	87, 90
BlsI	GCNGC	2 cut(s)	88, 91
Bme1390I	CCNGG	2 cut(s)	147, 200
BmeT110I	CYCGRG	1 cut(s)	56
BmrFI	CCNGG	2 cut(s)	147, 200
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	147, 200
BseDI	CCNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	57, 157
BspACI	CCGC	2 cut(s)	61, 86
BspANI	GGCC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	147, 200
Bst6I	CTCTTC	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	147, 200
BstSCI	CCNGG	2 cut(s)	145, 198
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	103
CviJI	RGCY	4 cut(s)	55, 71, 89, 150
CviKI_1	RGCY	4 cut(s)	55, 71, 89, 150
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	145, 198
EcoT38I	GRGCYC	1 cut(s)	57
FaiI	YATR	2 cut(s)	47, 174
Fnu4HI	GCNGC	2 cut(s)	87, 90
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	87, 90
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	87, 90
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	118, 185
Hpy188III	TCNNGA	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HspAI	GCGC	1 cut(s)	101
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	132, 159, 185, 212
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	126
MbiI	CCGCTC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	17, 62
MhlI	GDGCHC	2 cut(s)	57, 157
MluCI	AATT	2 cut(s)	8, 110
MnlI	CCTC	3 cut(s)	122, 179, 196
MspR9I	CCNGG	2 cut(s)	147, 200
MvaI	CCWGG	2 cut(s)	147, 200
MwoI	GCNNNNNNNGC	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	88, 91
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	145, 198
PspGI	CCWGG	2 cut(s)	145, 198
PspXI	VCTCGAGB	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	2 cut(s)	87, 90
ScrFI	CCNGG	2 cut(s)	147, 200
SduI	GDGCHC	2 cut(s)	57, 157
SetI	ASST	5 cut(s)	57, 73, 127, 148, 190
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 81
SmoI	CTYRAG	2 cut(s)	56, 81
Sse9I	AATT	2 cut(s)	8, 110
SsiI	CCGC	2 cut(s)	61, 86
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	145, 198
TaqI	TCGA	3 cut(s)	57, 165, 216
TasI	AATT	2 cut(s)	8, 110
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	89
TspRI	CASTG	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	56
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.