Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

1394771 .. 1399666

Gene Structure 4896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00970.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAACGGAAATGGACAAATGGAGGTGCATTACATAGACACTGGCTTCCCTTACACGGCGACAGAAAGCTTTATGGACTTCTTTGATGGTCTTACTCATGTGCCCCTGAACTATGGTCACCCCATGCCCGTACATGATCAGGCATCTGCATACTGGTCAATGAATATGAATTCATACAAATTTGGACTCACTGGTCCGGAAAGTACTTCTTATTGCAGTCCTTATGAGGTAAATACTCATTTTCCGAGAATGGACATGAGCAGGAGGGCTTGGGAATATCCTTTAATGACAAATTCAGAAGAGCCTGCAACCACTGCTACGCAGCCAGAAGAAAATGTAGTCGAGGAATCTGACGCCACAACCGAAGAATCCATTCCAAATGATCAAAACACAACTACTTCTCAGGTGGAATGGGAAGAAAACATTGATCCTGATAACATGACATATGAGGAATTACTCGACTTGGGTGAGGCAGTTGGTACTCAAAGCCGAGGGCTTTCCGATGAGCTTATTAGCATGCTTCCTACAACCAAATACAAGTGTGGAAGCTTTTTCTCGAGAAAGAAATCTGGAGAGAGATGTGTAATTTGCCAGGCGAGGTACAAAAGAGGAGCTCGACAAATCAAATTGCCCTGCAATCATCTTTACCATAGTAAATGCATCAGCAAATGGCTTGGCATCAACAAGATATGCCCAGTCTGCAACCTTGAGGTATTCGCCGAGGAATCAAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

4.9

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	186 - 235	3.6e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	193 - 235	4.5e-13	Ring finger domain
zf-C3HC4_2	PF13923	193 - 234	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	194 - 234	6.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	194 - 221	1.1e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	169, 179, 292
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	4 cut(s)	132, 205, 481, 602
AfiI	CCNNNNNNNGG	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	69, 508, 549, 614
AluI	AGCT	4 cut(s)	69, 508, 549, 614
Alw21I	GWGCWC	1 cut(s)	616
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	556
Aor13HI	TCCGGA	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	169, 179, 292
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	110, 479
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	593
BclI	TGATCA	2 cut(s)	136, 382
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	593
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	3 cut(s)	152, 669, 687
BmuI	ACTGGG	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	490, 720
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	4 cut(s)	46, 158, 196, 695
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	490, 720
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	4 cut(s)	46, 158, 196, 695
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	105, 616
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	136, 382, 427
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	294
BsrI	ACTGG	4 cut(s)	46, 158, 196, 695
BssECI	CCNNGG	2 cut(s)	490, 720
BssMI	GATC	3 cut(s)	136, 382, 427
BssNI	GRCGYC	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	306, 518
BstDEI	CTNAG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	139, 385, 430
BstMBI	GATC	3 cut(s)	136, 382, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 699
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	520
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	39, 189, 312
Cac8I	GCNNGC	2 cut(s)	306, 518
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	4 cut(s)	131, 204, 480, 601
CviAII	CATG	6 cut(s)	98, 124, 134, 256, 439, 517
CviQI	GTAC	4 cut(s)	131, 204, 480, 601
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	138, 384, 429
DpnII	GATC	3 cut(s)	136, 382, 427
DrdI	GACNNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	556
Eco91I	GGTNACC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	6 cut(s)	101, 127, 137, 259, 442, 520
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	6 cut(s)	97, 123, 133, 255, 438, 516
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	136, 382
Fnu4HI	GCNGC	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	591
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	6 cut(s)	101, 127, 137, 259, 442, 520
HindIII	AAGCTT	2 cut(s)	67, 547
HinfI	GANTC	4 cut(s)	186, 347, 368, 725
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	110, 479
Hpy188I	TCNGA	4 cut(s)	246, 298, 352, 502
Hpy188III	TCNNGA	5 cut(s)	197, 431, 556, 558, 570
HpyCH4V	TGCA	7 cut(s)	28, 149, 216, 308, 636, 660, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 699
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	101, 127, 137, 259, 442, 520
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	2 cut(s)	136, 382
Kzo9I	GATC	3 cut(s)	136, 382, 427
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	3 cut(s)	152, 669, 687
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	138, 384, 429
MboI	GATC	3 cut(s)	136, 382, 427
MboII	GAAGA	4 cut(s)	311, 341, 377, 428
MhlI	GDGCHC	2 cut(s)	105, 616
MluCI	AATT	6 cut(s)	169, 179, 292, 452, 585, 626
MlyI	GAGTC	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	662
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	284, 736
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	314, 699
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	136, 382, 427
NlaIII	CATG	6 cut(s)	101, 127, 137, 259, 442, 520
NmeAIII	GCCGAG	1 cut(s)	515
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	662
NspI	RCATGY	1 cut(s)	520
PaeI	GCATGC	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	347, 368, 725
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	591
PspEI	GGTNACC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	194
RsaI	GTAC	4 cut(s)	132, 205, 481, 602
RsaNI	GTAC	4 cut(s)	131, 204, 480, 601
SacI	GAGCTC	1 cut(s)	616
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	284, 736
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	136, 382, 427
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	105, 616
SfaNI	GCATC	3 cut(s)	152, 669, 687
Sfr274I	CTCGAG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	556, 707
SmoI	CTYRAG	2 cut(s)	556, 707
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	6 cut(s)	169, 179, 292, 452, 585, 626
SstI	GAGCTC	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	591
TaqI	TCGA	4 cut(s)	342, 459, 557, 616
TasI	AATT	6 cut(s)	169, 179, 292, 452, 585, 626
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	347, 368, 725
Tru1I	TTAA	2 cut(s)	284, 736
Tru9I	TTAA	2 cut(s)	284, 736
TscAI	CASTG	3 cut(s)	46, 196, 319
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	17, 162, 176, 182
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	46, 196, 319
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	3 cut(s)	169, 179, 292
XceI	RCATGY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.