Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

24093927 .. 24097065

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAATGTTAATGGACATATGGAAATGCATTACCTGGACACGGGCTATCCTTACCCGCCTACTGAAGGCTTCATGGGTTTCTTTGACGGTCTTGCTAATGTACCGATGAATTATGATCACACCATGCCAATGCATGATCAGGAAACTGCGTACTGGTCAATGAATATGAATTTATACAAGTTTGTACCATCTGGTCCGGGGAGTACTTCTTATTACGGTACATATGAGGTAAATGATCATTTACCAAGAATGGACGTCAGCAGGACGACTTGGGAATACCCTACAATGACAAATCCAGAAGAGCCTGCAACCTCCGACTCACAGCCAGAAGAAGACGCTGTCATGGAAGCTCAAGCTGTGCCTGAAGAATGTATTCAGAATCAGCAAAATACAAATACTTCTGAGGTTGCATGGCAAGAGGATATTGATCCTGATACCATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTCTCTGACGAACTTATTAGTTTGCTTCCATCGTCAAAATACAAGTGTGGAAACTTCTTTTTAAGGAAAAAATCCGGAGAGAGGTGTGTGATTTGCCAGATGCAGTATAAAAGAGGAGATCGACAAATCACATTGCCATGCAAACATGTCTACCATAGCGAATGCATCAGCAAATGGCTCGGTATCAACAAGGTATGCCCAGTTTGCAACCTCGAGGTTTTCGGTGAGGAGTCAAGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

246

Amino Acids

28.04

Weight (kDa)

4.62

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AbsI	CCTCGAGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	84, 384
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	5 cut(s)	102, 152, 186, 205, 220
AfiI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
AflIII	ACRYGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	350, 356
AluI	AGCT	2 cut(s)	350, 356
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	479, 731
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	339
BccI	CCATC	2 cut(s)	196, 532
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	3 cut(s)	115, 136, 235
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	35, 198
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	35, 198
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	2 cut(s)	585, 669
BmuI	ACTGGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	197, 490
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 65, 576
Bse1I	ACTGG	2 cut(s)	158, 695
Bse3DI	GCAATG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	197, 490
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	158, 695
BseRI	GAGGAG	2 cut(s)	624, 737
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	197, 570
BslI	CCNNNNNNNGG	3 cut(s)	40, 65, 576
BsmAI	GTCTC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	5 cut(s)	115, 136, 235, 427, 613
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	569
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	158, 695
BssECI	CCNNGG	2 cut(s)	197, 490
BssMI	GATC	5 cut(s)	115, 136, 235, 427, 613
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	89, 218
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	5 cut(s)	118, 139, 238, 430, 616
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	5 cut(s)	115, 136, 235, 427, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 699
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	33, 196
BstV2I	GAAGAC	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	101, 151, 185, 204, 219
CviAII	CATG	8 cut(s)	73, 124, 134, 343, 411, 439, 633, 641
CviJI	RGCY	8 cut(s)	45, 69, 304, 325, 350, 356, 489, 673
CviKI_1	RGCY	8 cut(s)	45, 69, 304, 325, 350, 356, 489, 673
CviQI	GTAC	5 cut(s)	101, 151, 185, 204, 219
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	5 cut(s)	117, 138, 237, 429, 615
DpnII	GATC	5 cut(s)	115, 136, 235, 427, 613
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	84, 384
Eco88I	CYCGRG	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	3 cut(s)	30, 135, 662
FaeI	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
FatI	CATG	8 cut(s)	72, 123, 133, 342, 410, 438, 632, 640
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	2 cut(s)	18, 223
FbaI	TGATCA	3 cut(s)	115, 136, 235
FblI	GTMKAC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	736
HapII	CCGG	2 cut(s)	197, 570
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
HinfI	GANTC	3 cut(s)	317, 379, 725
HpaII	CCGG	2 cut(s)	197, 570
HphI	GGTGA	2 cut(s)	479, 731
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	316, 378, 403, 502
Hpy188III	TCNNGA	4 cut(s)	140, 296, 431, 570
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	89, 218
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	8 cut(s)	28, 133, 308, 410, 598, 636, 660, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 699
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
Kpn2I	TCCGGA	1 cut(s)	569
Ksp22I	TGATCA	3 cut(s)	115, 136, 235
Kzo9I	GATC	5 cut(s)	115, 136, 235, 427, 613
LguI	GCTCTTC	1 cut(s)	294
LweI	GCATC	2 cut(s)	585, 669
MaeI	CTAG	1 cut(s)	736
MaeII	ACGT	1 cut(s)	255
MalI	GATC	5 cut(s)	117, 138, 237, 429, 615
MboI	GATC	5 cut(s)	115, 136, 235, 427, 613
MboII	GAAGA	4 cut(s)	311, 341, 344, 377
MluCI	AATT	3 cut(s)	109, 169, 452
MlyI	GAGTC	2 cut(s)	311, 734
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	3 cut(s)	30, 135, 662
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	9, 557
MslI	CAYNNNNRTG	2 cut(s)	128, 631
MspI	CCGG	2 cut(s)	197, 570
MspR9I	CCNGG	2 cut(s)	35, 198
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	486, 699
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	2 cut(s)	18, 223
NdeII	GATC	5 cut(s)	115, 136, 235, 427, 613
NlaIII	CATG	8 cut(s)	76, 127, 137, 346, 414, 442, 636, 644
NmeAIII	GCCGAG	1 cut(s)	515
NsiI	ATGCAT	3 cut(s)	30, 135, 662
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	707
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	379
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	2 cut(s)	311, 733
PpsI	GAGTC	2 cut(s)	311, 733
PscI	ACATGT	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	707
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	5 cut(s)	102, 152, 186, 205, 220
RsaNI	GTAC	5 cut(s)	101, 151, 185, 204, 219
RseI	CAYNNNNRTG	2 cut(s)	128, 631
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	9, 557
Sau3AI	GATC	5 cut(s)	115, 136, 235, 427, 613
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	2 cut(s)	311, 734
ScrFI	CCNGG	2 cut(s)	35, 198
SfaNI	GCATC	2 cut(s)	585, 669
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	128, 631
SmlI	CTYRAG	2 cut(s)	351, 707
SmoI	CTYRAG	2 cut(s)	351, 707
Sse9I	AATT	3 cut(s)	109, 169, 452
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	736
StyD4I	CCNGG	2 cut(s)	33, 196
TaaI	ACNGT	2 cut(s)	89, 218
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	616, 708
TasI	AATT	3 cut(s)	109, 169, 452
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	9, 557
Tru9I	TTAA	2 cut(s)	9, 557
TspDTI	ATGAA	5 cut(s)	17, 61, 122, 176, 182
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	736
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	3 cut(s)	30, 135, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.