Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

1422027 .. 1426224

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTCTTGTCAGTAGGCTTCAATCTCTGTCTTCCTCTTTGTCTTCCACCCATTTCAGAAAACCCGATTCCTTAAACCCTCAACCCATTTGCTCTCTACACTTCAACAACTCCCCTTCTTACACTTCTCCTTTTACAGAGAAGCATTCTATTGAGAGGTACCAGAGAGACCAGTGGCTATACAATAACCAATTGGAGCAACCCACTCTTTTCTCTCTCCCTCCTGATACTGATGCTGATGCTGACTCTGATCTCACAAGGCAGAATGACATTGCTTTGCAGCTACCAGAGCTGAGAAAGCTGCTTCAGGTGCTAAGAGAGAAGAGAGAGAGGGAAGGAGGGTGTGGTGGAGGAGGAGGCAAGTGTGGGCCTGGCAATGTCTTCTTGGTCGGCACTGGCCCTGGGGACCCTGAACTCCTCACATTGAAGGCTGTCAGAGTTGTACAGAGTGCTGATTTATTGTTGTATGATAGGTTGGTGTCCAATCATGTGTTGGATTTTGTTGCCTCTGATGCTAGACTTGTCTATGTGGGCAAGACTGCCGGGTACCATAGCAGAACCCAGGAGGAGATACATGAACTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCACTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCAGGTATCACTGCTGCTTCTGGGATAGCAGCAGAGCTAGGGATCCCATTAACTCACAGAGGTGTTGCAAATAGTGTAAGATTTCTGACCGGGCACTCCAGGAAGGGAGGAACCGATCCTCTTTTTGTGGCAGAGAATGCAGCTGACCCTGATTCAACCTTGGTGGTATACATGGGTTTGTCGACTCTCCCTTCTCTTGCTCAAAAGTTGGTCCATCATGGTCTGCCACCAACAACACCAGCTGTTGCAGTTGAGCGAGGGACCACACCTCAACAGCGCATGGTCTTTGCAGAACTGAAGGATCTTGCCAATGAAATTACATTAGCAGAGTTAGTATCACCAACGCTCATCGTCATTGGGAAAGTCGTTGCACTTTCACCATTGTGGCCACATACTTTGAACGAAGTGGCTGCTCTTGTCGGAGCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

379

Amino Acids

40.84

Weight (kDa)

5.78

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	127 - 339	1.4e-51	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	159, 546
AccB1I	GGYRCC	2 cut(s)	159, 546
AccI	GTMKAC	2 cut(s)	876, 890
AclWI	GGATC	6 cut(s)	629, 642, 745, 758, 818, 1017
AcoI	YGGCCR	1 cut(s)	1094
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	3 cut(s)	290, 618, 1025
AfaI	GTAC	3 cut(s)	161, 444, 548
AgsI	TTSAA	6 cut(s)	23, 106, 427, 695, 864, 1108
AjnI	CCWGG	5 cut(s)	370, 400, 561, 709, 806
AleI	CACNNNNGTG	2 cut(s)	768, 1090
AluBI	AGCT	8 cut(s)	283, 292, 301, 602, 608, 745, 851, 950
AluI	AGCT	8 cut(s)	283, 292, 301, 602, 608, 745, 851, 950
Alw26I	GTCTC	2 cut(s)	162, 613
AlwI	GGATC	6 cut(s)	629, 642, 745, 758, 818, 1017
AoxI	GGCC	3 cut(s)	368, 397, 1094
ApeKI	GCWGC	6 cut(s)	280, 301, 722, 737, 848, 1118
ApoI	RAATTY	1 cut(s)	690
Asp718I	GGTACC	2 cut(s)	159, 546
AspLEI	GCGC	1 cut(s)	987
AspS9I	GGNCC	5 cut(s)	368, 398, 406, 919, 969
AsuC2I	CCSGG	2 cut(s)	544, 799
AsuHPI	GGTGA	2 cut(s)	1038, 1077
AvaII	GGWCC	3 cut(s)	406, 919, 969
BaeGI	GKGCMC	1 cut(s)	804
BalI	TGGCCA	1 cut(s)	1096
BamHI	GGATCC	2 cut(s)	634, 750
BanI	GGYRCC	2 cut(s)	159, 546
BbsI	GAAGAC	3 cut(s)	24, 36, 373
BbvI	GCAGC	6 cut(s)	288, 292, 709, 749, 860, 1105
BccI	CCATC	2 cut(s)	661, 930
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BciT130I	CCWGG	5 cut(s)	372, 402, 563, 711, 808
BcnI	CCSGG	2 cut(s)	544, 799
BcoDI	GTCTC	2 cut(s)	162, 613
BfaI	CTAG	2 cut(s)	516, 746
BisI	GCNGC	6 cut(s)	281, 302, 723, 738, 849, 1119
BlsI	GCNGC	6 cut(s)	282, 303, 724, 739, 850, 1120
Bme1390I	CCNGG	7 cut(s)	372, 402, 544, 563, 711, 799, 808
Bme18I	GGWCC	3 cut(s)	406, 919, 969
BmgT120I	GGNCC	5 cut(s)	368, 398, 406, 919, 969
BmiI	GGNNCC	9 cut(s)	161, 407, 408, 548, 636, 752, 820, 970, 1132
BmrFI	CCNGG	7 cut(s)	372, 402, 544, 563, 711, 799, 808
BmsI	GCATC	3 cut(s)	223, 229, 502
BpiI	GAAGAC	3 cut(s)	24, 36, 373
BpmI	CTGGAG	2 cut(s)	624, 790
BpuMI	CCSGG	2 cut(s)	544, 799
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	400, 401, 561, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bse1I	ACTGG	3 cut(s)	172, 400, 645
Bse3DI	GCAATG	2 cut(s)	270, 382
BseBI	CCWGG	5 cut(s)	372, 402, 563, 711, 808
BseDI	CCNNGG	4 cut(s)	400, 401, 561, 867
BseMI	GCAATG	2 cut(s)	270, 382
BseMII	CTCAG	2 cut(s)	284, 578
BseNI	ACTGG	3 cut(s)	172, 400, 645
BseRI	GAGGAG	5 cut(s)	366, 369, 407, 581, 677
BseSI	GKGCMC	1 cut(s)	804
BseXI	GCAGC	6 cut(s)	288, 292, 709, 749, 860, 1105
BshFI	GGCC	3 cut(s)	370, 399, 1096
BshNI	GGYRCC	2 cut(s)	159, 546
BsiSI	CCGG	2 cut(s)	543, 798
BslFI	GGGAC	2 cut(s)	419, 982
BsmAI	GTCTC	2 cut(s)	162, 613
BsmFI	GGGAC	2 cut(s)	419, 982
BsmI	GAATGC	2 cut(s)	145, 850
BsnI	GGCC	3 cut(s)	370, 399, 1096
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	804
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	250, 634, 750, 823, 1009
BspANI	GGCC	3 cut(s)	370, 399, 1096
BspCNI	CTCAG	2 cut(s)	285, 579
BspLI	GGNNCC	9 cut(s)	161, 407, 408, 548, 636, 752, 820, 970, 1132
BspPI	GGATC	6 cut(s)	629, 642, 745, 758, 818, 1017
BspT107I	GGYRCC	2 cut(s)	159, 546
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	270, 382
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	3 cut(s)	172, 400, 645
BssECI	CCNNGG	4 cut(s)	400, 401, 561, 867
BssMI	GATC	5 cut(s)	250, 634, 750, 823, 1009
BssNAI	GTATAC	1 cut(s)	877
BssT1I	CCWWGG	1 cut(s)	867
Bst1107I	GTATAC	1 cut(s)	877
Bst2UI	CCWGG	5 cut(s)	372, 402, 563, 711, 808
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	293, 314, 587
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	5 cut(s)	253, 637, 753, 826, 1012
BstMAI	GTCTC	2 cut(s)	162, 613
BstMBI	GATC	5 cut(s)	250, 634, 750, 823, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 298, 310, 512, 845
BstNI	CCWGG	5 cut(s)	372, 402, 563, 711, 808
BstSCI	CCNGG	7 cut(s)	370, 400, 542, 561, 709, 797, 806
BstSLI	GKGCMC	1 cut(s)	804
BstV1I	GCAGC	6 cut(s)	288, 292, 709, 749, 860, 1105
BstV2I	GAAGAC	3 cut(s)	24, 36, 373
BstX2I	RGATCY	3 cut(s)	634, 750, 1009
BstYI	RGATCY	3 cut(s)	634, 750, 1009
BstZ17I	GTATAC	1 cut(s)	877
BsuRI	GGCC	3 cut(s)	370, 399, 1096
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	4 cut(s)	179, 393, 638, 717
CfoI	GCGC	1 cut(s)	987
Cfr13I	GGNCC	5 cut(s)	368, 398, 406, 919, 969
Csp6I	GTAC	3 cut(s)	160, 443, 547
CspCI	CAANNNNNGTGG	4 cut(s)	852, 887, 1086, 1121
CviAII	CATG	5 cut(s)	488, 575, 880, 926, 988
CviQI	GTAC	3 cut(s)	160, 443, 547
DdeI	CTNAG	3 cut(s)	293, 314, 587
DpnI	GATC	5 cut(s)	252, 636, 752, 825, 1011
DpnII	GATC	5 cut(s)	250, 634, 750, 823, 1009
EaeI	YGGCCR	1 cut(s)	1094
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	406, 919, 969
Eco57I	CTGAAG	3 cut(s)	290, 618, 1025
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	690
EcoRII	CCWGG	5 cut(s)	370, 400, 561, 709, 806
EcoT14I	CCWWGG	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	5 cut(s)	491, 578, 883, 929, 991
FaqI	GGGAC	2 cut(s)	419, 982
FatI	CATG	5 cut(s)	487, 574, 879, 925, 987
FblI	GTMKAC	2 cut(s)	876, 890
Fnu4HI	GCNGC	6 cut(s)	281, 302, 723, 738, 849, 1119
Fsp4HI	GCNGC	6 cut(s)	281, 302, 723, 738, 849, 1119
FspBI	CTAG	2 cut(s)	516, 746
GlaI	GCGC	1 cut(s)	986
GluI	GCNGC	6 cut(s)	281, 302, 723, 738, 849, 1119
GsuI	CTGGAG	2 cut(s)	624, 790
HaeIII	GGCC	3 cut(s)	370, 399, 1096
HapII	CCGG	2 cut(s)	543, 798
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	5 cut(s)	491, 578, 883, 929, 991
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	4 cut(s)	68, 245, 860, 892
HpaII	CCGG	2 cut(s)	543, 798
HphI	GGTGA	2 cut(s)	1038, 1077
Hpy166II	GTNNAC	2 cut(s)	877, 891
Hpy188I	TCNGA	6 cut(s)	59, 250, 437, 511, 795, 1130
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	877, 891
HpyAV	CCTTC	7 cut(s)	126, 329, 421, 645, 805, 909, 1000
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4V	TGCA	8 cut(s)	280, 679, 700, 776, 848, 956, 998, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 298, 310, 512, 845
HpyF3I	CTNAG	3 cut(s)	293, 314, 587
Hsp92II	CATG	5 cut(s)	491, 578, 883, 929, 991
HspAI	GCGC	1 cut(s)	985
KflI	GGGWCCC	1 cut(s)	406
KpnI	GGTACC	2 cut(s)	163, 550
Kzo9I	GATC	5 cut(s)	250, 634, 750, 823, 1009
LmnI	GCTCC	3 cut(s)	196, 605, 1130
Lsp1109I	GCAGC	6 cut(s)	288, 292, 709, 749, 860, 1105
LweI	GCATC	3 cut(s)	223, 229, 502
MaeI	CTAG	2 cut(s)	516, 746
MalI	GATC	5 cut(s)	252, 636, 752, 825, 1011
MboI	GATC	5 cut(s)	250, 634, 750, 823, 1009
MboII	GAAGA	4 cut(s)	24, 36, 334, 373
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	3 cut(s)	634, 750, 1009
MhlI	GDGCHC	1 cut(s)	804
MlsI	TGGCCA	1 cut(s)	1096
MluCI	AATT	3 cut(s)	191, 690, 1023
MluNI	TGGCCA	1 cut(s)	1096
MlyI	GAGTC	2 cut(s)	239, 886
MmeI	TCCRAC	2 cut(s)	474, 1108
Mox20I	TGGCCA	1 cut(s)	1096
MscI	TGGCCA	1 cut(s)	1096
MseI	TTAA	2 cut(s)	74, 758
MslI	CAYNNNNRTG	2 cut(s)	768, 1090
Msp20I	TGGCCA	1 cut(s)	1096
MspA1I	CMGCKG	2 cut(s)	851, 950
MspI	CCGG	2 cut(s)	543, 798
MspR9I	CCNGG	7 cut(s)	372, 402, 544, 563, 711, 799, 808
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	2 cut(s)	145, 850
MvaI	CCWGG	5 cut(s)	372, 402, 563, 711, 808
MwoI	GCNNNNNNNGC	5 cut(s)	289, 298, 310, 512, 845
NciI	CCSGG	2 cut(s)	544, 799
NdeII	GATC	5 cut(s)	250, 634, 750, 823, 1009
NlaIII	CATG	5 cut(s)	491, 578, 883, 929, 991
NlaIV	GGNNCC	9 cut(s)	161, 407, 408, 548, 636, 752, 820, 970, 1132
OliI	CACNNNNGTG	2 cut(s)	768, 1090
PasI	CCCWGGG	1 cut(s)	401
PctI	GAATGC	2 cut(s)	145, 850
PfeI	GAWTC	2 cut(s)	68, 860
PfoI	TCCNGGA	1 cut(s)	806
PkrI	GCNGC	6 cut(s)	282, 303, 724, 739, 850, 1120
PleI	GAGTC	2 cut(s)	239, 886
PpsI	GAGTC	2 cut(s)	239, 886
PpuMI	RGGWCCY	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	5 cut(s)	370, 400, 561, 709, 806
PspGI	CCWGG	5 cut(s)	370, 400, 561, 709, 806
PspN4I	GGNNCC	9 cut(s)	161, 407, 408, 548, 636, 752, 820, 970, 1132
PspPI	GGNCC	5 cut(s)	368, 398, 406, 919, 969
PspPPI	RGGWCCY	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	634, 750, 1009
PvuII	CAGCTG	2 cut(s)	851, 950
RsaI	GTAC	3 cut(s)	161, 444, 548
RsaNI	GTAC	3 cut(s)	160, 443, 547
RseI	CAYNNNNRTG	2 cut(s)	768, 1090
SalI	GTCGAC	1 cut(s)	889
SaqAI	TTAA	2 cut(s)	74, 758
SatI	GCNGC	6 cut(s)	281, 302, 723, 738, 849, 1119
Sau3AI	GATC	5 cut(s)	250, 634, 750, 823, 1009
Sau96I	GGNCC	5 cut(s)	368, 398, 406, 919, 969
SchI	GAGTC	2 cut(s)	239, 886
ScrFI	CCNGG	7 cut(s)	372, 402, 544, 563, 711, 799, 808
SduI	GDGCHC	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	223, 229, 502
SinI	GGWCC	3 cut(s)	406, 919, 969
SmiMI	CAYNNNNRTG	2 cut(s)	768, 1090
Sse9I	AATT	3 cut(s)	191, 690, 1023
SspMI	CTAG	2 cut(s)	516, 746
StyD4I	CCNGG	7 cut(s)	370, 400, 542, 561, 709, 797, 806
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	890
TasI	AATT	3 cut(s)	191, 690, 1023
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	2 cut(s)	68, 860
Tru1I	TTAA	2 cut(s)	74, 758
Tru9I	TTAA	2 cut(s)	74, 758
TscAI	CASTG	4 cut(s)	179, 400, 645, 724
TseI	GCWGC	6 cut(s)	280, 301, 722, 737, 848, 1118
TspDTI	ATGAA	2 cut(s)	591, 1035
TspRI	CASTG	4 cut(s)	179, 400, 645, 724
VpaK11BI	GGWCC	3 cut(s)	406, 919, 969
XapI	RAATTY	1 cut(s)	690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	2 cut(s)	876, 890
XspI	CTAG	2 cut(s)	516, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.