Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

1059115 .. 1064075

Gene Structure 4961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G012300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAACGGGAATGGACAAATGGATGTGCATTACATAGATACCGACTTTCCTTACACGCCTACTGAAAGCTTCATGGACTTCTTTGGAGGTGTTACCCATGTACCGATGAACTATGGCCATGCCATGCCGATGCATGATCAGGAAACTGCATACTGGTCAATGAATATGCATTCATACAAATTTGGACCCTCTGGTCCGGGGAGTAATTCTTATTACGGTAATTATTATGAGGTAAATGATCATTTGCCCAGAATGGATGTCAGCAGGAGGACTTGGGAACACCCTTCAGTGATGAATTCAGAAGAGCCTGCAAACATTGATTCACATCCAGAAGAAGAAGATGCAGTCGCAGAAGCTGCACCTGAAGAATGCATTCAGAATCAGCAAAATACAAATACTTCTCAGGTCGTATGGCAAGAGGATATTGATCCTGATAACATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTTTCTGACGAACTTATTAGTTTGCTTCCAACGTCAAAATACAAGTGTGGAAGCTTCTTCTCAAGAAAGAAATCTGGAGAGAGGTGTGTGATTTGCCAGATGAGGTATAAAAGAGGAGATCGACAAATCAACTTGCCATGCAAACATGTTTACCATAGTGAATGCATCAGCAAATGGCTCGGTATCAACAAGGTATGCCCAGTTTGCAACCTCGAGGTTTCTGGTGAGGAATCAAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

246

Amino Acids

27.98

Weight (kDa)

4.89

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	192
AbsI	CCTCGAGG	1 cut(s)	707
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	179, 295
AcuI	CTGAAG	2 cut(s)	270, 384
AfaI	GTAC	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	640
AluBI	AGCT	3 cut(s)	69, 356, 549
AluI	AGCT	3 cut(s)	69, 356, 549
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	2 cut(s)	179, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	185, 194
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	479, 731
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	2 cut(s)	185, 194
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BalI	TGGCCA	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BclI	TGATCA	2 cut(s)	136, 238
BcnI	CCSGG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	185, 194
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	185, 194
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	3 cut(s)	120, 331, 669
BmuI	ACTGGG	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	198
BsaBI	GATNNNNATC	2 cut(s)	324, 426
BsaJI	CCNNGG	2 cut(s)	197, 490
Bse1I	ACTGG	2 cut(s)	158, 695
Bse8I	GATNNNNATC	2 cut(s)	324, 426
BseDI	CCNNGG	2 cut(s)	197, 490
BseGI	GGATG	3 cut(s)	28, 262, 325
BseJI	GATNNNNATC	2 cut(s)	324, 426
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	158, 695
BseRI	GAGGAG	1 cut(s)	624
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	197
BsmI	GAATGC	4 cut(s)	169, 372, 374, 662
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	707
Bsp143I	GATC	4 cut(s)	136, 238, 427, 613
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	158, 695
BssECI	CCNNGG	2 cut(s)	197, 490
BssMI	GATC	4 cut(s)	136, 238, 427, 613
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	28, 262, 325
BstKTI	GATC	4 cut(s)	139, 241, 430, 616
BstMBI	GATC	4 cut(s)	136, 238, 427, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 486, 699
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	28, 262, 325
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	185, 194
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	8 cut(s)	73, 98, 119, 124, 134, 439, 633, 641
CviJI	RGCY	7 cut(s)	69, 117, 307, 356, 489, 549, 673
CviKI_1	RGCY	7 cut(s)	69, 117, 307, 356, 489, 549, 673
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	138, 240, 429, 615
DpnII	GATC	4 cut(s)	136, 238, 427, 613
DrdI	GACNNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	185, 194
Eco57I	CTGAAG	2 cut(s)	270, 384
Eco88I	CYCGRG	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	295
EcoT22I	ATGCAT	4 cut(s)	135, 171, 374, 662
FaeI	CATG	8 cut(s)	76, 101, 122, 127, 137, 442, 636, 644
FatI	CATG	8 cut(s)	72, 97, 118, 123, 133, 438, 632, 640
FbaI	TGATCA	2 cut(s)	136, 238
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	3 cut(s)	35, 269, 312
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	8 cut(s)	76, 101, 122, 127, 137, 442, 636, 644
HindIII	AAGCTT	2 cut(s)	67, 547
HinfI	GANTC	3 cut(s)	320, 379, 725
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	479, 731
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	3 cut(s)	301, 378, 502
Hpy188III	TCNNGA	5 cut(s)	140, 329, 431, 558, 570
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 486, 699
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	8 cut(s)	76, 101, 122, 127, 137, 442, 636, 644
Ksp22I	TGATCA	2 cut(s)	136, 238
Kzo9I	GATC	4 cut(s)	136, 238, 427, 613
LguI	GCTCTTC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	3 cut(s)	120, 331, 669
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	138, 240, 429, 615
MboI	GATC	4 cut(s)	136, 238, 427, 613
MboII	GAAGA	6 cut(s)	314, 344, 347, 350, 377, 544
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	5 cut(s)	179, 205, 220, 295, 452
MluNI	TGGCCA	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	548
Mox20I	TGGCCA	1 cut(s)	117
Mph1103I	ATGCAT	4 cut(s)	135, 171, 374, 662
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	1 cut(s)	736
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	4 cut(s)	169, 372, 374, 662
MwoI	GCNNNNNNNGC	3 cut(s)	356, 486, 699
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	136, 238, 427, 613
NlaIII	CATG	8 cut(s)	76, 101, 122, 127, 137, 442, 636, 644
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	515
NsiI	ATGCAT	4 cut(s)	135, 171, 374, 662
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	707
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	4 cut(s)	169, 372, 374, 662
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	320, 379, 725
PkrI	GCNGC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	185, 194
PspXI	VCTCGAGB	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	736
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	4 cut(s)	136, 238, 427, 613
Sau96I	GGNCC	2 cut(s)	185, 194
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	120, 331, 669
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	2 cut(s)	185, 194
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	556, 707
SmoI	CTYRAG	2 cut(s)	556, 707
Sse9I	AATT	5 cut(s)	179, 205, 220, 295, 452
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	616, 708
TasI	AATT	5 cut(s)	179, 205, 220, 295, 452
TfiI	GAWTC	3 cut(s)	320, 379, 725
Tru1I	TTAA	1 cut(s)	736
Tru9I	TTAA	1 cut(s)	736
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	6 cut(s)	17, 61, 122, 162, 176, 308
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	185, 194
XapI	RAATTY	2 cut(s)	179, 295
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	372
Zsp2I	ATGCAT	4 cut(s)	135, 171, 374, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.