Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

1427037 .. 1428054

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTATAATCAAATGATTGGTCATACCCTCAGTTGGATATTGACTCATGCTGAAAATTGCTTTTGTTGCTGTTTTCTCTATGTGTGGGCAATGGTGGCTACTGCAACAACGCTTGGCCTTGAAATGGGACTGTCGGATTCAATATTTGGCTTGACTGTTGTTTATGCAGGCATTGTGATTTATGATGCCCAGATTTATACTCTGCAAGTTGAGAGGCTGCATAGTATCTCTCTGTTCCATCTTAGTCATCAGGAAACAGATGCTTCAGAATACTATGCAAGAACAGATACAGTACTAGTTTTCAGGAGAAAACAATCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

5.87

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	33, 124
AgsI	TTSAA	2 cut(s)	122, 141
AhlI	ACTAGT	1 cut(s)	295
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	217
ArsI	GACNNNNNNTTYG	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	246
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	294
BmsI	GCATC	2 cut(s)	175, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 124
Bse3DI	GCAATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	33, 124
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	33, 124
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	96
Bst4CI	ACNGT	3 cut(s)	132, 157, 292
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	29, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 95
BstV1I	GCAGC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	4 cut(s)	98, 117, 150, 217
CviKI_1	RGCY	4 cut(s)	98, 117, 150, 217
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	29, 242
Eco57I	CTGAAG	1 cut(s)	249
FaeI	CATG	1 cut(s)	50
FaiI	YATR	9 cut(s)	6, 24, 48, 81, 165, 183, 198, 222, 276
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	2 cut(s)	43, 137
Hpy188I	TCNGA	2 cut(s)	136, 268
Hpy188III	TCNNGA	2 cut(s)	251, 304
HpyCH4III	ACNGT	3 cut(s)	132, 157, 292
HpyCH4V	TGCA	5 cut(s)	104, 167, 205, 220, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 95
HpyF3I	CTNAG	2 cut(s)	29, 242
Hsp92II	CATG	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	153, 203, 236, 289
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	2 cut(s)	175, 250
MaeI	CTAG	1 cut(s)	296
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	14, 114
MnlI	CCTC	2 cut(s)	38, 207
MwoI	GCNNNNNNNGC	2 cut(s)	66, 95
NlaIII	CATG	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SatI	GCNGC	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	1 cut(s)	37
SfaNI	GCATC	2 cut(s)	175, 250
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	1 cut(s)	55
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	132, 157, 292
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	217
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.