Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Reverse (-)

36864149 .. 36870350

Gene Structure 6202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1313100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAATGTTAATGGACATATGGAAATGCATTACCTGGACACCGGCTATCCTTACCAGCCTACTGAAGGCTTCATGGGTTTCTTTGACGGTCTTGCTAATGTACCGATGAATTATGGTCACACCATCCCGATGCATGATCAGGAAACTGCATACTGGTCAATGAACATGAGTTCATACAAGTTTTTACCATCTGGTCCGGGGAGTACTTCTTATTACGGTACATATGAGGTAAATGATCATTTACCAAGAATGGACGTCAGCAGGAGGTCTTGGGAATACCCTACAGTGACAAATCCAGAAGAGCCTGCAACCTCCGACTCACAGCCAGAAGAGGACGCTGTCATGGAAGCTCAAGCTGTGCCTGAAGAATGTATTCAGAATCAGCAAAATACAAATACTTCCGAGGTTGCATGGCAAGAGGACATTGATCCTGATAACATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTTTCTGACGAACTTATTAGTTTGCTTCCATCATCAAAGTACAAGTGTGGAAACTTCTTTTTAAGAAAAAAATCCGGAGAGAGGTGTGTGATTTGCCAGATGCAGTATAAAAGAGGAGATCGACAAATCACATTGCCATGCAAACATGTCTACCATAGCGAATGCATCAGCAAATGGCTCGGTATCAACAAGGTATGCCCAGTTTGCAACCTCGAGGTTTTCGGTGAGGATTTGGTTATTTTTTCTTTGCCTATACATAAAGTAGTTGAAGACTATGGTAAGACTGTGGTCCTCCCCCTTTATCTCTTTCGTTTAACACGCTCCGGTGAAGTAGTAGAGAAAACAAACCCTATAATTCAACCTCCTGTAAGTGAATATGAGATTCAAATAAGAGATAAATTACCTGACAAATTTATATTGTGCGTAAAATCACTGATTTGCGTCGAAGCTAGAGGTTTAGTTTATTTGAGCTTTGTGTTATTGAAAATATTGAGGTGGATCAGATCTTATTTGGGTTCGTATGATGCCTTTTTTTCCACAAATCTTAAAAATCACATGATTGTCATCCAAAAGCCACGTGTACCTCCGAAGCCCAGATCCAAGAATGGGAAATCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

372

Amino Acids

42.5

Weight (kDa)

5.56

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	188 - 235	1.3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	193 - 235	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	193 - 234	2.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	194 - 221	1.2e-07	RING-like zinc finger
zf-C3HC4	PF00097	194 - 234	2.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	194 - 232	1e-05	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AbsI	CCTCGAGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	569
AclWI	GGATC	3 cut(s)	422, 1001, 1086
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	2 cut(s)	84, 384
AcvI	CACGTG	1 cut(s)	1073
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	5 cut(s)	102, 205, 220, 536, 1077
AfiI	CCNNNNNNNGG	3 cut(s)	65, 576, 1101
AflIII	ACRYGT	2 cut(s)	640, 1072
AgsI	TTSAA	4 cut(s)	764, 854, 881, 979
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	350, 356, 944, 966
AluI	AGCT	4 cut(s)	350, 356, 944, 966
AlwI	GGATC	3 cut(s)	422, 1001, 1086
Ama87I	CYCGRG	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	905
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	194, 784
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	479, 731, 833
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	2 cut(s)	194, 784
BbrPI	CACGTG	1 cut(s)	1073
BbsI	GAAGAC	1 cut(s)	771
BccI	CCATC	3 cut(s)	131, 196, 532
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	2 cut(s)	136, 235
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	945
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	998
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	35, 198
Bme18I	GGWCC	2 cut(s)	194, 784
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	194, 784
BmrFI	CCNGG	2 cut(s)	35, 198
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	4 cut(s)	120, 585, 669, 1009
BmuI	ACTGGG	1 cut(s)	689
BoxI	GACNNNNGTC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	1073
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	197, 402, 490
BsaWI	WCCGGW	2 cut(s)	569, 818
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 576, 1101
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	158, 695
Bse3DI	GCAATG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	1058
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	197, 402, 490
BseGI	GGATG	2 cut(s)	123, 1059
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	3 cut(s)	65, 576, 1101
BseMI	GCAATG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	158, 695
BseRI	GAGGAG	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	4 cut(s)	42, 197, 570, 819
BslI	CCNNNNNNNGG	3 cut(s)	65, 576, 1101
BsmI	GAATGC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
BspEI	TCCGGA	1 cut(s)	569
BspPI	GGATC	3 cut(s)	422, 1001, 1086
BspQI	GCTCTTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	158, 695
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	197, 402, 490
BssMI	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	4 cut(s)	89, 218, 286, 781
Bst6I	CTCTTC	2 cut(s)	294, 324
BstACI	GRCGYC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	123, 1059
BstKTI	GATC	7 cut(s)	139, 238, 430, 616, 996, 1001, 1094
BstMBI	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 699
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	644
BstPAI	GACNNNNGTC	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	33, 196
BstSFI	CTRYAG	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	998, 1091
BstYI	RGATCY	2 cut(s)	998, 1091
BtsCI	GGATG	2 cut(s)	123, 1059
BtsIMutI	CAGTG	2 cut(s)	291, 926
Cac8I	GCNNGC	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	194, 784
CseI	GACGC	2 cut(s)	344, 925
Csp6I	GTAC	5 cut(s)	101, 204, 219, 535, 1076
CviAII	CATG	9 cut(s)	73, 134, 166, 343, 411, 439, 633, 641, 1051
CviQI	GTAC	5 cut(s)	101, 204, 219, 535, 1076
DpnI	GATC	7 cut(s)	138, 237, 429, 615, 995, 1000, 1093
DpnII	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
Eam1104I	CTCTTC	2 cut(s)	294, 324
EarI	CTCTTC	2 cut(s)	294, 324
Eco47I	GGWCC	2 cut(s)	194, 784
Eco57I	CTGAAG	2 cut(s)	84, 384
Eco72I	CACGTG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	3 cut(s)	30, 135, 662
FaeI	CATG	9 cut(s)	76, 137, 169, 346, 414, 442, 636, 644, 1054
FatI	CATG	9 cut(s)	72, 133, 165, 342, 410, 438, 632, 640, 1050
FauNDI	CATATG	2 cut(s)	18, 223
FbaI	TGATCA	2 cut(s)	136, 235
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	2 cut(s)	110, 1046
FspBI	CTAG	1 cut(s)	945
HapII	CCGG	4 cut(s)	42, 197, 570, 819
HgaI	GACGC	2 cut(s)	344, 925
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	9 cut(s)	76, 137, 169, 346, 414, 442, 636, 644, 1054
HinfI	GANTC	3 cut(s)	317, 379, 877
HpaII	CCGG	4 cut(s)	42, 197, 570, 819
HphI	GGTGA	3 cut(s)	479, 731, 833
Hpy166II	GTNNAC	2 cut(s)	646, 1076
Hpy188I	TCNGA	6 cut(s)	316, 378, 403, 502, 998, 1083
Hpy188III	TCNNGA	5 cut(s)	127, 140, 296, 431, 570
Hpy8I	GTNNAC	2 cut(s)	646, 1076
Hpy99I	CGWCG	1 cut(s)	941
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	4 cut(s)	89, 218, 286, 781
HpyCH4IV	ACGT	2 cut(s)	255, 1072
HpyCH4V	TGCA	9 cut(s)	28, 133, 149, 308, 410, 598, 636, 660, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 699
HpySE526I	ACGT	2 cut(s)	255, 1072
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	9 cut(s)	76, 137, 169, 346, 414, 442, 636, 644, 1054
Kpn2I	TCCGGA	1 cut(s)	569
Ksp22I	TGATCA	2 cut(s)	136, 235
Kzo9I	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	821
LweI	GCATC	4 cut(s)	120, 585, 669, 1009
MaeI	CTAG	1 cut(s)	945
MaeII	ACGT	2 cut(s)	255, 1072
MaeIII	GTNAC	2 cut(s)	116, 286
MalI	GATC	7 cut(s)	138, 237, 429, 615, 995, 1000, 1093
MboI	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
MboII	GAAGA	4 cut(s)	311, 341, 377, 776
MflI	RGATCY	2 cut(s)	998, 1091
MluCI	AATT	5 cut(s)	109, 452, 849, 893, 905
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	3 cut(s)	30, 135, 662
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	9, 557, 809, 1041
MslI	CAYNNNNRTG	2 cut(s)	128, 631
MspI	CCGG	4 cut(s)	42, 197, 570, 819
MspR9I	CCNGG	2 cut(s)	35, 198
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	486, 699
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	2 cut(s)	18, 223
NdeII	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
NlaIII	CATG	9 cut(s)	76, 137, 169, 346, 414, 442, 636, 644, 1054
NmeAIII	GCCGAG	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	116, 286
NsiI	ATGCAT	3 cut(s)	30, 135, 662
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	707
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	379, 877
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	311
PmaCI	CACGTG	1 cut(s)	1073
PmlI	CACGTG	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	1073
PscI	ACATGT	1 cut(s)	640
PshAI	GACNNNNGTC	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	33
PspCI	CACGTG	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	194, 784
PspXI	VCTCGAGB	1 cut(s)	707
PsuI	RGATCY	2 cut(s)	998, 1091
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	5 cut(s)	102, 205, 220, 536, 1077
RsaNI	GTAC	5 cut(s)	101, 204, 219, 535, 1076
RseI	CAYNNNNRTG	2 cut(s)	128, 631
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	9, 557, 809, 1041
Sau3AI	GATC	7 cut(s)	136, 235, 427, 613, 993, 998, 1091
Sau96I	GGNCC	2 cut(s)	194, 784
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	35, 198
SfaNI	GCATC	4 cut(s)	120, 585, 669, 1009
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	2 cut(s)	194, 784
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	128, 631
SmlI	CTYRAG	2 cut(s)	351, 707
SmoI	CTYRAG	2 cut(s)	351, 707
Sse9I	AATT	5 cut(s)	109, 452, 849, 893, 905
SspI	AATATT	1 cut(s)	984
SspMI	CTAG	1 cut(s)	945
StyD4I	CCNGG	2 cut(s)	33, 196
TaaI	ACNGT	4 cut(s)	89, 218, 286, 781
TaiI	ACGT	2 cut(s)	258, 1075
TaqI	TCGA	3 cut(s)	616, 708, 939
TasI	AATT	5 cut(s)	109, 452, 849, 893, 905
TatI	WGTACW	2 cut(s)	203, 534
TfiI	GAWTC	2 cut(s)	379, 877
Tru1I	TTAA	4 cut(s)	9, 557, 809, 1041
Tru9I	TTAA	4 cut(s)	9, 557, 809, 1041
TscAI	CASTG	2 cut(s)	291, 933
TseFI	GTSAC	2 cut(s)	116, 286
Tsp45I	GTSAC	2 cut(s)	116, 286
TspDTI	ATGAA	5 cut(s)	17, 61, 122, 162, 176
TspRI	CASTG	2 cut(s)	291, 933
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	194, 784
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	905
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	945
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	3 cut(s)	30, 135, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.