Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

670597 .. 671318

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAATGAGAATGGACAATACCTAGACGCCGGCTTTCCTTACACACCTACCGAAGGCTTCATGGGTTTCTTTGACGGTCTTTCTCATGTACCGATGAATTATGGTCACGCCATGCTGATGCATGATCAGGAAAGTGCATACTGGTCAATGAACATGAGTTCGTACAAGTTTTTACCATCTGGTCCGGAGAGTACTTCTTATTACAGTACTTACGAGGTAAATGATCATTTACCAAGAATGGACGTCAGCAGGAGGACTTGGGAATACCCTTCAGTGATGAATGCAGAAAAGCCCGCAAACACCGATTCACAGCCAGAAGAAGATTCTGTCATGGAAGCGCAAGCTACACCTGAAGAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

121

Amino Acids

13.72

Weight (kDa)

4.26

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	27, 243
AfaI	GTAC	4 cut(s)	90, 164, 193, 208
AfiI	CCNNNNNNNGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	182
BccI	CCATC	1 cut(s)	184
BclI	TGATCA	2 cut(s)	124, 223
BfaI	CTAG	1 cut(s)	23
BmcAI	AGTACT	2 cut(s)	193, 208
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	27, 243
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	30, 185
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	124, 223
BspACI	CCGC	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	2 cut(s)	124, 223
BssNI	GRCGYC	2 cut(s)	27, 243
Bst4CI	ACNGT	2 cut(s)	77, 206
BstACI	GRCGYC	2 cut(s)	27, 243
BstC8I	GCNNGC	3 cut(s)	31, 294, 342
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	127, 226
BstMBI	GATC	2 cut(s)	124, 223
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	31, 294, 342
CfoI	GCGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	89, 163, 192, 207
CviAII	CATG	6 cut(s)	61, 86, 112, 122, 154, 331
CviJI	RGCY	5 cut(s)	33, 57, 292, 313, 344
CviKI_1	RGCY	5 cut(s)	33, 57, 292, 313, 344
CviQI	GTAC	4 cut(s)	89, 163, 192, 207
DpnI	GATC	2 cut(s)	126, 225
DpnII	GATC	2 cut(s)	124, 223
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	6 cut(s)	64, 89, 115, 125, 157, 334
FaiI	YATR	8 cut(s)	62, 87, 102, 113, 123, 139, 155, 332
FatI	CATG	6 cut(s)	60, 85, 111, 121, 153, 330
FauI	CCCGC	1 cut(s)	301
FbaI	TGATCA	2 cut(s)	124, 223
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	339
HapII	CCGG	2 cut(s)	30, 185
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	2 cut(s)	27, 243
Hin1II	CATG	6 cut(s)	64, 89, 115, 125, 157, 334
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	2 cut(s)	305, 323
HpaII	CCGG	2 cut(s)	30, 185
Hpy188III	TCNNGA	2 cut(s)	128, 185
HpyAV	CCTTC	2 cut(s)	47, 279
HpyCH4III	ACNGT	2 cut(s)	77, 206
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	121, 137, 284
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	27, 243
Hsp92II	CATG	6 cut(s)	64, 89, 115, 125, 157, 334
HspAI	GCGC	1 cut(s)	338
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	2 cut(s)	124, 223
Kzo9I	GATC	2 cut(s)	124, 223
LpnPI	CCDG	7 cut(s)	43, 113, 127, 165, 198, 235, 327
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	126, 225
MboI	GATC	2 cut(s)	124, 223
MboII	GAAGA	2 cut(s)	329, 332
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	2 cut(s)	208, 246
Mph1103I	ATGCAT	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	2 cut(s)	30, 185
Mva1269I	GAATGC	1 cut(s)	286
NaeI	GCCGGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	124, 223
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	6 cut(s)	64, 89, 115, 125, 157, 334
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	123
PctI	GAATGC	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	305, 323
PspPI	GGNCC	1 cut(s)	182
RsaI	GTAC	4 cut(s)	90, 164, 193, 208
RsaNI	GTAC	4 cut(s)	89, 163, 192, 207
RseI	CAYNNNNRTG	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	124, 223
Sau96I	GGNCC	1 cut(s)	182
ScaI	AGTACT	2 cut(s)	193, 208
SetI	ASST	6 cut(s)	24, 49, 219, 246, 346, 352
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	77, 206
TaiI	ACGT	1 cut(s)	246
TasI	AATT	1 cut(s)	97
TatI	WGTACW	2 cut(s)	191, 206
TfiI	GAWTC	2 cut(s)	305, 323
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	5 cut(s)	17, 49, 110, 164, 293
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	51
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	244
ZrmI	AGTACT	2 cut(s)	193, 208
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.