Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

1481746 .. 1483220

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTCTGACGGTGTTGGACGCGAATATCTCCAGCTTCGACAGCGTGTTTGAGAAATTCAGAGCAGAAGCACCAAAGAATAAGGCCAATCTCATCCTCTTCTTGGCTGACAAAGACCCTGCCACTTCTCTCAGTTGGTGTCCAGATTGTGTGAGAGCCGAACCTGTAATCTACAAAAAGCTGGAAGCTGCACCTGGTGATGTCGCACTTCTGAGAGCATATGTTGGAGATAGACCAACATGGAGGACTCCTCAACACCCATGGAGAGTGGACTCAAGGTTTAAGATTACTGGAGTTCCAACACTCGTCCGCTGGGAAAATGATGCTGTCAAGGGTCGCCTTGAAGACTATGAAGCGCATGTTGAAAAGAAGATCGACACACTTGTTTCCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

6.73

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TXD17-like_Trx	PF06110	13 - 128	8.9e-37	Thioredoxin domain-containing protein 17-like, thioredoxin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	344, 365
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	36, 181, 188
AluI	AGCT	3 cut(s)	36, 181, 188
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	2 cut(s)	16, 312
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	295
BseAI	TCCGGA	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	145, 203
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	144, 204
BspEI	TCCGGA	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	131, 212
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	358
CseI	GACGC	1 cut(s)	29
CsiI	ACCWGGT	1 cut(s)	193
CviAII	CATG	3 cut(s)	240, 261, 359
CviJI	RGCY	6 cut(s)	36, 86, 107, 158, 181, 188
CviKI_1	RGCY	6 cut(s)	36, 86, 107, 158, 181, 188
DdeI	CTNAG	2 cut(s)	131, 212
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	243, 264, 362
FaiI	YATR	6 cut(s)	220, 222, 241, 262, 351, 360
FatI	CATG	3 cut(s)	239, 260, 358
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	2 cut(s)	16, 312
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	243, 264, 362
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	247, 272
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	9, 62, 213
Hpy188III	TCNNGA	2 cut(s)	143, 390
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	131, 212
Hsp92II	CATG	3 cut(s)	243, 264, 362
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	46, 132, 156, 167, 177, 180, 207, 276, 298
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	313
MabI	ACCWGGT	1 cut(s)	193
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	3 cut(s)	91, 356, 382
MluCI	AATT	2 cut(s)	56, 394
MlyI	GAGTC	2 cut(s)	241, 266
MmeI	TCCRAC	2 cut(s)	205, 323
MnlI	CCTC	4 cut(s)	15, 107, 237, 261
MroI	TCCGGA	1 cut(s)	389
MseI	TTAA	2 cut(s)	282, 397
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	243, 264, 362
NspI	RCATGY	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	241, 266
PpsI	GAGTC	2 cut(s)	241, 266
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	282, 397
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	241, 266
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	6 cut(s)	38, 166, 183, 190, 196, 281
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	56, 394
SsiI	CCGC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	39, 375
TasI	AATT	2 cut(s)	56, 394
Tru1I	TTAA	2 cut(s)	282, 397
Tru9I	TTAA	2 cut(s)	282, 397
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	366
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.