Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003179

Physical Location & Seq

Genomic Coordinates Forward (+)

871945 .. 879417

Gene Structure 7473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1009300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAATGAGAATGGACATATGGAAGTGCATTACCTAGACACCGGCTTTCCTTACACACCTACCGAAGGCTTCATGGGTTTCTTTGACGGTCTTTCTCATGTACCGATGAATTATGGTCTTGCCATGCCAATGCATGATCAGGAAACTGCGTACTGGTCAATGAACATGAGTTCGTACAAGGTTTTACCATCTGGTCCAGAGAGTACTTCTTATTACGGTACTTATGAGGTAAATGATCATTTACCAAGAATGGACGTCAGCAGGAGGAGTTGGGAGTACCCTTCAGTGATGAATGCAGAAGAGCCTGCAAACACCGACTCACACCTAGAAGAAGATGCTGTCATGGAAGCGCAAGCTACACCTACACCTGAGGAATGTATTCAGAATCAGCAAAATATAAGTACTTCTGAGGTTGCATGGCAAGAGGACATTGATCCTGATAACATGACCTATGAGGAATTACTTGACTTGGGTGAGGCAGTTGGCACTCAAAGCCGAGGTCTTTCCGACGAACTTATTAGTTTGCTTCCATTGTCAAAATACAAGTGTGGAAACTTCTTTTTAAGGAAAAAATCCGGAGAGAGGTGTGTGATTTGCCAGATGCAGTATAAAAGAGGGGATCGACAAATCACATTGCCATGCAAACATGTCTACCATAGCGAATGCATCAGCAAATGGCTCGGTATCAACAAGGTATGCCCAGTTTGCAACCTCGAGGTTTTCGGTGAGGAGTCAAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

248

Amino Acids

28.21

Weight (kDa)

4.7

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	190 - 237	7.2e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	195 - 237	6.2e-14	Ring finger domain
zf-C3HC4_2	PF13923	195 - 236	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	196 - 223	7.2e-08	RING-like zinc finger
zf-C3HC4	PF00097	196 - 236	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	196 - 234	2.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63530 AT3G63530
fragaria_vesca	FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970 FvH4_7g00970
malus_domestica	MD02G1313100.v1.1 MD07G1009300.v1.1
prunus_persica	Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1 Prupe.2G012300_v2.0.a1
pyrus_communis	pycom02g26270 pycom07g00780 pycom07g00830
rosa_chinensis	RchiOBHm_Chr1g0315871
rosa_laevigata	RLG00000030727
rosa_multiflora	Rmu_ssc0000154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331360
rosa_rugosa	Rorug01G0006300 Rorug01G0006400 Rorug01G0006500 Rorug01G0006600 Rorug01G0006700
rosa_samantha	Rh1AG017400 Rh1BG009900 Rh1CG014700 Rh1DG010300
rosa_wichuraiana	Rw1G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AbsI	CCTCGAGG	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	651
AccIII	TCCGGA	1 cut(s)	575
AclWI	GGATC	2 cut(s)	428, 627
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	7 cut(s)	102, 152, 176, 205, 220, 278, 403
AfiI	CCNNNNNNNGG	2 cut(s)	65, 582
AflIII	ACRYGT	1 cut(s)	646
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	2 cut(s)	428, 627
Ama87I	CYCGRG	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	575
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	485, 737
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	369
BccI	CCATC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BclI	TGATCA	2 cut(s)	136, 235
BfaI	CTAG	2 cut(s)	35, 326
BmcAI	AGTACT	2 cut(s)	205, 403
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	325, 591, 675
BmuI	ACTGGG	1 cut(s)	695
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	496
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 582
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	158, 701
Bse21I	CCTNAGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	632
BseAI	TCCGGA	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	65, 582
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	360, 399
BseNI	ACTGG	2 cut(s)	158, 701
BseRI	GAGGAG	2 cut(s)	280, 743
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	42, 576
BslI	CCNNNNNNNGG	2 cut(s)	65, 582
BsmI	GAATGC	2 cut(s)	298, 668
BsoBI	CYCGRG	1 cut(s)	713
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	136, 235, 433, 619
BspCNI	CTCAG	2 cut(s)	361, 400
BspEI	TCCGGA	1 cut(s)	575
BspPI	GGATC	2 cut(s)	428, 627
BspQI	GCTCTTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	158, 701
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	4 cut(s)	136, 235, 433, 619
BssNI	GRCGYC	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	89, 218
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	306, 354
BstDEI	CTNAG	2 cut(s)	369, 408
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	139, 238, 436, 622
BstMBI	GATC	4 cut(s)	136, 235, 433, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	492, 705
BstNSI	RCATGY	1 cut(s)	650
Bsu36I	CCTNAGG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	306, 354
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	7 cut(s)	101, 151, 175, 204, 219, 277, 402
CviJI	RGCY	6 cut(s)	45, 69, 304, 356, 495, 679
CviKI_1	RGCY	6 cut(s)	45, 69, 304, 356, 495, 679
CviQI	GTAC	7 cut(s)	101, 151, 175, 204, 219, 277, 402
DdeI	CTNAG	2 cut(s)	369, 408
DpnI	GATC	4 cut(s)	138, 237, 435, 621
DpnII	GATC	4 cut(s)	136, 235, 433, 619
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	713
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoT22I	ATGCAT	2 cut(s)	135, 668
FauNDI	CATATG	1 cut(s)	18
FbaI	TGATCA	2 cut(s)	136, 235
FblI	GTMKAC	1 cut(s)	651
FspBI	CTAG	2 cut(s)	35, 326
GlaI	GCGC	1 cut(s)	351
HapII	CCGG	2 cut(s)	42, 576
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	317, 385, 731
HpaII	CCGG	2 cut(s)	42, 576
HphI	GGTGA	2 cut(s)	485, 737
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	384, 409, 508
Hpy188III	TCNNGA	4 cut(s)	140, 197, 437, 576
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	59, 291
HpyCH4III	ACNGT	2 cut(s)	89, 218
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	9 cut(s)	28, 133, 296, 308, 416, 604, 642, 666, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	492, 705
HpyF3I	CTNAG	2 cut(s)	369, 408
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	575
Ksp22I	TGATCA	2 cut(s)	136, 235
Kzo9I	GATC	4 cut(s)	136, 235, 433, 619
LguI	GCTCTTC	1 cut(s)	294
LweI	GCATC	3 cut(s)	325, 591, 675
MaeI	CTAG	2 cut(s)	35, 326
MaeII	ACGT	1 cut(s)	255
MalI	GATC	4 cut(s)	138, 237, 435, 621
MboI	GATC	4 cut(s)	136, 235, 433, 619
MboII	GAAGA	3 cut(s)	311, 341, 344
MluCI	AATT	2 cut(s)	109, 458
MlyI	GAGTC	2 cut(s)	311, 740
MmeI	TCCRAC	1 cut(s)	531
Mph1103I	ATGCAT	2 cut(s)	135, 668
MroI	TCCGGA	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	128, 637
MspI	CCGG	2 cut(s)	42, 576
Mva1269I	GAATGC	2 cut(s)	298, 668
MwoI	GCNNNNNNNGC	2 cut(s)	492, 705
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	4 cut(s)	136, 235, 433, 619
NmeAIII	GCCGAG	1 cut(s)	521
NsiI	ATGCAT	2 cut(s)	135, 668
NspI	RCATGY	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	713
PciI	ACATGT	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	294
PctI	GAATGC	2 cut(s)	298, 668
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	385
PleI	GAGTC	2 cut(s)	311, 739
PpsI	GAGTC	2 cut(s)	311, 739
PscI	ACATGT	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	713
RsaI	GTAC	7 cut(s)	102, 152, 176, 205, 220, 278, 403
RsaNI	GTAC	7 cut(s)	101, 151, 175, 204, 219, 277, 402
RseI	CAYNNNNRTG	2 cut(s)	128, 637
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	563
Sau3AI	GATC	4 cut(s)	136, 235, 433, 619
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	2 cut(s)	205, 403
SchI	GAGTC	2 cut(s)	311, 740
SfaNI	GCATC	3 cut(s)	325, 591, 675
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	128, 637
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	2 cut(s)	109, 458
SspMI	CTAG	2 cut(s)	35, 326
TaaI	ACNGT	2 cut(s)	89, 218
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	622, 714
TasI	AATT	2 cut(s)	109, 458
TatI	WGTACW	2 cut(s)	203, 401
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	291
TspDTI	ATGAA	5 cut(s)	17, 61, 122, 176, 305
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	650
XhoI	CTCGAG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	35, 326
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	2 cut(s)	205, 403
Zsp2I	ATGCAT	2 cut(s)	135, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.