Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

100919 .. 101788

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00234.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATCTCCTTTTCATCGAATATACGCCTGCATAGTGATGCTAAGCCTTTCAATTACTTAAGCCATTCGTCGTACGCACGAGCTTTCAGCTCCAAATCTGATGATTTCGGAAGTATTGTAGCATCTGGTGTTACTGGGTCTGGTGATGGGAATGGGAATGATTGGGTTGAGAAAGCTAAAGATGTGGTGCAGACTAGTGTCAATGCTGTTGCTGAGACTGCAAAGAAGACTAAAGATGTCTCTGATGAGATGATTCCTCATGTTCAGCAGTTCCTTGACTCTAACCCGTATCTCAAAGATGTTATAGTTCCTGTTAGTCTCACTGTGACTGGTACTTTATTTGCTTGGATAGTGATGCCTAGGATTCTTAGAAGGTTTCACACTTATGCTATGCAAAGTTCCGCTAAACTGCTTCCCGTTGGCTTCTCTAATGAAGACATTCCTTATGAGAAAAGCTTTTGGGGAGCTTTAGAGGATCCTGCTCGTTACTTGGTGACCTTCATTGCTTTTGCACAAATTGCTGCAATGGTGGCGCCAACAACTATAGCAGCTCAATACTTTTCCCCGACTGTGAAGGGAGCGGTTATTCTCTCAGTTGTGTGGTTCCTGTATCGGTGGAAGACCAATGTGATTACCCGAATGTTGTCGGCTAAGAGTTTTGGTGGGCTTGATAGGGACAAGGTATTGACTTTAGACAAAGTATCATCTGTTGGTCTTTTCGCTATCGGTTTGATGGCTTCTGCTGAAGCATGTGGTGTAGCTGTTCAATCTATCTTGACAGTTGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

263

Amino Acids

28.61

Weight (kDa)

7.8

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	581
AciI	CCGC	2 cut(s)	402, 581
AclWI	GGATC	2 cut(s)	470, 483
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	533
AfaI	GTAC	2 cut(s)	74, 334
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	52, 767
AhlI	ACTAGT	1 cut(s)	194
AluBI	AGCT	7 cut(s)	83, 90, 176, 456, 467, 551, 761
AluI	AGCT	7 cut(s)	83, 90, 176, 456, 467, 551, 761
Alw26I	GTCTC	3 cut(s)	209, 244, 323
AlwI	GGATC	2 cut(s)	470, 483
ApeKI	GCWGC	2 cut(s)	521, 548
Asp700I	GAANNNNTTC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	155, 505
AvrII	CCTAGG	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	3 cut(s)	233, 441, 626
BbvI	GCAGC	2 cut(s)	508, 560
BccI	CCATC	2 cut(s)	140, 727
BcoDI	GTCTC	3 cut(s)	209, 244, 323
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	195, 360
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	2 cut(s)	522, 549
BlnI	CCTAGG	1 cut(s)	359
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	2 cut(s)	523, 550
BmiI	GGNNCC	3 cut(s)	477, 534, 605
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	28, 131, 345
BmuI	ACTGGG	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	3 cut(s)	233, 441, 626
Bpu1102I	GCTNAGC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	359
Bse1I	ACTGG	2 cut(s)	139, 334
Bse3DI	GCAATG	2 cut(s)	501, 531
BseDI	CCNNGG	1 cut(s)	359
BseMI	GCAATG	2 cut(s)	501, 531
BseMII	CTCAG	2 cut(s)	204, 606
BseNI	ACTGG	2 cut(s)	139, 334
BseXI	GCAGC	2 cut(s)	508, 560
BsgI	GTGCAG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	532
BsiWI	CGTACG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	689
BsmAI	GTCTC	3 cut(s)	209, 244, 323
BsmFI	GGGAC	1 cut(s)	689
Bsp143I	GATC	2 cut(s)	3, 475
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	402, 581
BspCNI	CTCAG	2 cut(s)	205, 605
BspLI	GGNNCC	3 cut(s)	477, 534, 605
BspPI	GGATC	2 cut(s)	470, 483
BspT107I	GGYRCC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	501, 531
BsrI	ACTGG	2 cut(s)	139, 334
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	3, 475
BssNI	GRCGYC	1 cut(s)	533
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	325, 571, 781
BstACI	GRCGYC	1 cut(s)	533
BstAFI	CTTAAG	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	5 cut(s)	42, 213, 368, 592, 651
BstEII	GGTNACC	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	2 cut(s)	6, 478
BstMAI	GTCTC	3 cut(s)	209, 244, 323
BstMBI	GATC	2 cut(s)	3, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 518, 530
BstNSI	RCATGY	1 cut(s)	753
BstPAI	GACNNNNGTC	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	508, 560
BstV2I	GAAGAC	3 cut(s)	233, 441, 626
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	73, 333
CviAII	CATG	2 cut(s)	260, 750
CviQI	GTAC	2 cut(s)	73, 333
DdeI	CTNAG	5 cut(s)	42, 213, 368, 592, 651
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	2 cut(s)	5, 477
DpnII	GATC	2 cut(s)	3, 475
Eco130I	CCWWGG	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	765
Eco91I	GGTNACC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	359
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	2 cut(s)	263, 753
FaiI	YATR	9 cut(s)	23, 33, 261, 305, 387, 392, 447, 545, 751
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	2 cut(s)	259, 749
Fnu4HI	GCNGC	2 cut(s)	522, 549
Fsp4HI	GCNGC	2 cut(s)	522, 549
FspBI	CTAG	2 cut(s)	195, 360
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	2 cut(s)	522, 549
HaeII	RGCGCY	1 cut(s)	536
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	263, 753
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	3 cut(s)	253, 278, 364
HphI	GGTGA	2 cut(s)	155, 505
Hpy188I	TCNGA	3 cut(s)	100, 110, 244
Hpy188III	TCNNGA	1 cut(s)	775
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	366, 508, 568
HpyCH4III	ACNGT	3 cut(s)	325, 571, 781
HpyCH4V	TGCA	6 cut(s)	31, 190, 221, 394, 512, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 518, 530
HpyF3I	CTNAG	5 cut(s)	42, 213, 368, 592, 651
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	263, 753
HspAI	GCGC	1 cut(s)	533
KasI	GGCGCC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	3, 475
LmnI	GCTCC	3 cut(s)	95, 464, 578
LpnPI	CCDG	8 cut(s)	41, 111, 120, 126, 315, 324, 492, 620
Lsp1109I	GCAGC	2 cut(s)	508, 560
LweI	GCATC	3 cut(s)	28, 131, 345
MaeI	CTAG	2 cut(s)	195, 360
MaeIII	GTNAC	4 cut(s)	130, 325, 485, 493
MalI	GATC	2 cut(s)	5, 477
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	2 cut(s)	3, 475
MboII	GAAGA	3 cut(s)	238, 446, 631
MflI	RGATCY	1 cut(s)	475
MluCI	AATT	2 cut(s)	52, 516
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	2 cut(s)	267, 466
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	36, 384
MspCI	CTTAAG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	218, 518, 530
NarI	GGCGCC	1 cut(s)	533
NdeII	GATC	2 cut(s)	3, 475
NlaIII	CATG	2 cut(s)	263, 753
NlaIV	GGNNCC	3 cut(s)	477, 534, 605
NmuCI	GTSAC	2 cut(s)	325, 493
NspI	RCATGY	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	253, 364
Pfl23II	CGTACG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	523, 550
PleI	GAGTC	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	272
PshAI	GACNNNNGTC	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	493
PspLI	CGTACG	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	477, 534, 605
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	2 cut(s)	74, 334
RsaNI	GTAC	2 cut(s)	73, 333
RseI	CAYNNNNRTG	2 cut(s)	36, 384
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	522, 549
Sau3AI	GATC	2 cut(s)	3, 475
SchI	GAGTC	1 cut(s)	272
SfaNI	GCATC	3 cut(s)	28, 131, 345
SfcI	CTRYAG	1 cut(s)	543
SfoI	GGCGCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	2 cut(s)	36, 384
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	2 cut(s)	52, 516
SsiI	CCGC	2 cut(s)	402, 581
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	2 cut(s)	195, 360
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	325, 571, 781
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	52, 516
TfiI	GAWTC	2 cut(s)	253, 364
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	325, 493
TseI	GCWGC	2 cut(s)	521, 548
Tsp45I	GTSAC	2 cut(s)	325, 493
TspDTI	ATGAA	2 cut(s)	447, 490
TspRI	CASTG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	753
XmaJI	CCTAGG	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	195, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.