Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

49468693 .. 49473008

Gene Structure 4316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG267500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCTGGACGTAGGCTTTCCATGCTGAAGTCACTTTGCAAGTCTACCAATTGCTCTCTCAACCCAATGTCGTTTCAGTTGTCTAGTTCTTATGGGAAATTTGTGAGCTATGCTGATTCAGTTCTTGTAAGACCATCGTATGCTTTTGTGAATCGCGGTTACCATACAAAGGAAACAGAATCCCATAAAACTTTTGCAAATACTCAGATTAAAGCACTGGGTTCTGGATCACTTGTTAATACACGATGTTACGGAACCAAACCTAGTACAGCATTTTCACCCACATTGTCAAGTTCACTTAGTAGGTGTGCTTTTCCTCCTGTTTCGATAAGCCCAATTCTGGGTTGCCGCTCATACTCATCATTTTTCGGTAGCAATGCTGATAAAGATGGGCAACCTGGAGTTCCTGCTGCTTCCAGTGGCAGTGAAGTGGATGTTGGTAATAGTGGTGTTGGTGGAAGTGATTTGGTTGGTAAGGTTAAGGAATTCGTGCAGGGTGCTGCGGATGCGGTAACTCATACTGGGCAGAAGGCTAAAGAAGCATCTAGTGAAATTTCCCCTTATGTTCAGCAATTGTTGGATGCATATCCACATCTTAGAAATGTGGTTACTCCAGTTGGTTGTACTTTGGCAGGTACTATATTTGCTTGGCTAGTGATGCCTAGGCTTTTCAGGAGGTTTCACAAGTACGCAAGTCTAGGCCGCACTGCTTTACTATCTGGAAGCCTTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGCGATACCTATTTACTTTTATGGCATTTTCACAGATTGGCACAATGGTTGCACCAACCGCTATAGCTGCTCAATATCTTGCACCAGCTTGGAGAGGTGCAGCTATCATTTCATTTGTTTGGTTTCTATATCGGTGGAAGACAAATGTGTATACTCGTGCATTAGCAACTAAAAGTTTGCCCAGCAGTCTTGATCGGGAGAAGTTGTTAGCTCTAGACAAAATTTCATCTGTTGGTCTTTTTATGATTGGGATAATGGCTCTAGCTGAGGCATGTGGGGTGGCTGTGCAATCTATTATGACTGTTGGTGGCATAGGAGGAGTTGCTACTGCTTTTGCTGCTAGAGATGTCCTTGGCAATGTGCTGAGTGGTTTATCTATGCAATTTACAAAGCCCTTTTCGCTAGGTGATACAATAAAGGTATGTTGCTATGCATTCATACAGTGTGTTTGTTGGTGCATTTTAGTTAATCCCATTCATTCTATCAGATTGGCAAAATGTTTCTTAAGAATAGGTTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

434

Amino Acids

46.72

Weight (kDa)

9.37

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	44, 932
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	156, 349, 503, 509, 703, 840
AclWI	GGATC	3 cut(s)	235, 770, 783
AcsI	RAATTY	4 cut(s)	98, 485, 552, 1002
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	4 cut(s)	268, 625, 637, 689
AfiI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
AflII	CTTAAG	1 cut(s)	1285
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	6 cut(s)	108, 848, 869, 884, 992, 1046
AluI	AGCT	6 cut(s)	108, 848, 869, 884, 992, 1046
AlwI	GGATC	3 cut(s)	235, 770, 783
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	5 cut(s)	410, 500, 848, 881, 1118
ApoI	RAATTY	4 cut(s)	98, 485, 552, 1002
AspA2I	CCTAGG	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	270, 1199
AvrII	CCTAGG	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	936
BbsI	GAAGAC	1 cut(s)	926
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	5 cut(s)	397, 487, 835, 893, 1105
BccI	CCATC	2 cut(s)	142, 383
BciT130I	CCWGG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	843
BfrI	CTTAAG	1 cut(s)	1285
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	7 cut(s)	349, 411, 501, 703, 849, 882, 1119
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	7 cut(s)	350, 412, 502, 704, 850, 883, 1120
Bme1390I	CCNGG	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	256, 777
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	2 cut(s)	227, 531
BmsI	GCATC	4 cut(s)	496, 551, 571, 648
BmuI	ACTGGG	2 cut(s)	227, 531
BpiI	GAAGAC	1 cut(s)	926
BpmI	CTGGAG	2 cut(s)	420, 597
Bpu10I	CCTNAGC	1 cut(s)	1047
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	662, 1132
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 340, 341
Bse1I	ACTGG	5 cut(s)	222, 417, 526, 614, 779
Bse3DI	GCAATG	2 cut(s)	382, 1144
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	662, 1132
BseGI	GGATG	3 cut(s)	439, 511, 586
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
BseMI	GCAATG	2 cut(s)	382, 1144
BseMII	CTCAG	3 cut(s)	218, 1038, 1136
BseNI	ACTGG	5 cut(s)	222, 417, 526, 614, 779
BseRI	GAGGAG	2 cut(s)	746, 1113
BseXI	GCAGC	5 cut(s)	397, 487, 835, 893, 1105
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	2 cut(s)	512, 900
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
BsmI	GAATGC	1 cut(s)	1214
BsnI	GGCC	1 cut(s)	702
Bsp143I	GATC	3 cut(s)	227, 775, 973
BspACI	CCGC	6 cut(s)	156, 349, 503, 509, 703, 840
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	217, 1039, 1137
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	256, 777
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	3 cut(s)	235, 770, 783
BspTI	CTTAAG	1 cut(s)	1285
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	382, 1144
BsrI	ACTGG	5 cut(s)	222, 417, 526, 614, 779
BssECI	CCNNGG	2 cut(s)	662, 1132
BssMI	GATC	3 cut(s)	227, 775, 973
BssNAI	GTATAC	1 cut(s)	933
BssSI	CACGAG	1 cut(s)	936
BssT1I	CCWWGG	2 cut(s)	662, 1132
Bst1107I	GTATAC	1 cut(s)	933
Bst2BI	CACGAG	1 cut(s)	936
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	1084, 1224
BstAFI	CTTAAG	1 cut(s)	1285
BstDEI	CTNAG	5 cut(s)	204, 299, 596, 1047, 1145
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	439, 511, 586
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	230, 778, 976
BstMBI	GATC	3 cut(s)	227, 775, 973
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 506, 539, 658, 839, 848, 1118, 1180
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	1056
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	397, 487, 835, 893, 1105
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BstZ17I	GTATAC	1 cut(s)	933
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	439, 511, 586
BtsI	GCAGTG	2 cut(s)	430, 705
BtsIMutI	CAGTG	6 cut(s)	215, 424, 430, 705, 786, 1229
BveI	ACCTGC	1 cut(s)	623
Csp6I	GTAC	4 cut(s)	267, 624, 636, 688
CviAII	CATG	2 cut(s)	22, 1053
CviQI	GTAC	4 cut(s)	267, 624, 636, 688
DdeI	CTNAG	5 cut(s)	204, 299, 596, 1047, 1145
DpnI	GATC	3 cut(s)	229, 777, 975
DpnII	GATC	3 cut(s)	227, 775, 973
Eco130I	CCWWGG	2 cut(s)	662, 1132
Eco57I	CTGAAG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	662, 1132
EcoT22I	ATGCAT	2 cut(s)	586, 1216
ErhI	CCWWGG	2 cut(s)	662, 1132
FaeI	CATG	2 cut(s)	25, 1056
FatI	CATG	2 cut(s)	21, 1052
FauNDI	CATATG	1 cut(s)	745
FblI	GTMKAC	2 cut(s)	44, 932
Fnu4HI	GCNGC	7 cut(s)	349, 411, 501, 703, 849, 882, 1119
FokI	GGATG	3 cut(s)	446, 518, 593
Fsp4HI	GCNGC	7 cut(s)	349, 411, 501, 703, 849, 882, 1119
GluI	GCNGC	7 cut(s)	349, 411, 501, 703, 849, 882, 1119
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	2 cut(s)	420, 597
HaeIII	GGCC	1 cut(s)	702
Hin1II	CATG	2 cut(s)	25, 1056
HinfI	GANTC	3 cut(s)	116, 151, 179
HphI	GGTGA	2 cut(s)	270, 1199
Hpy166II	GTNNAC	3 cut(s)	45, 296, 933
Hpy188I	TCNGA	2 cut(s)	207, 1268
Hpy188III	TCNNGA	6 cut(s)	225, 673, 720, 971, 977, 995
Hpy8I	GTNNAC	3 cut(s)	45, 296, 933
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	2 cut(s)	1084, 1224
HpyCH4IV	ACGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 506, 539, 658, 839, 848, 1118, 1180
HpyF3I	CTNAG	5 cut(s)	204, 299, 596, 1047, 1145
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	25, 1056
Kzo9I	GATC	3 cut(s)	227, 775, 973
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	5 cut(s)	397, 487, 835, 893, 1105
LweI	GCATC	4 cut(s)	496, 551, 571, 648
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	5 cut(s)	30, 158, 248, 511, 607
MalI	GATC	3 cut(s)	229, 777, 975
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	3 cut(s)	227, 775, 973
MboII	GAAGA	1 cut(s)	931
MfeI	CAATTG	2 cut(s)	49, 572
MflI	RGATCY	1 cut(s)	775
MluCI	AATT	8 cut(s)	49, 98, 336, 485, 552, 572, 1002, 1163
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	327, 669, 724, 766, 869, 1042, 1091
Mph1103I	ATGCAT	2 cut(s)	586, 1216
MseI	TTAA	5 cut(s)	210, 237, 480, 1248, 1286
MspCI	CTTAAG	1 cut(s)	1285
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	2 cut(s)	49, 572
Mva1269I	GAATGC	1 cut(s)	1214
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	8 cut(s)	22, 506, 539, 658, 839, 848, 1118, 1180
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	227, 775, 973
NlaIII	CATG	2 cut(s)	25, 1056
NlaIV	GGNNCC	2 cut(s)	256, 777
NmuCI	GTSAC	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	586, 1216
NspI	RCATGY	1 cut(s)	1056
PctI	GAATGC	1 cut(s)	1214
PfeI	GAWTC	3 cut(s)	116, 151, 179
PkrI	GCNGC	7 cut(s)	350, 412, 502, 704, 850, 883, 1120
Psp6I	CCWGG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	962
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	256, 777
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	4 cut(s)	268, 625, 637, 689
RsaNI	GTAC	4 cut(s)	267, 624, 636, 688
SaqAI	TTAA	5 cut(s)	210, 237, 480, 1248, 1286
SatI	GCNGC	7 cut(s)	349, 411, 501, 703, 849, 882, 1119
Sau3AI	GATC	3 cut(s)	227, 775, 973
ScrFI	CCNGG	1 cut(s)	399
SfaNI	GCATC	4 cut(s)	496, 551, 571, 648
SfcI	CTRYAG	1 cut(s)	843
SmlI	CTYRAG	2 cut(s)	728, 1285
SmoI	CTYRAG	2 cut(s)	728, 1285
Sse9I	AATT	8 cut(s)	49, 98, 336, 485, 552, 572, 1002, 1163
SsiI	CCGC	6 cut(s)	156, 349, 503, 509, 703, 840
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	662, 1132
TaaI	ACNGT	2 cut(s)	1084, 1224
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	326
TasI	AATT	8 cut(s)	49, 98, 336, 485, 552, 572, 1002, 1163
TatI	WGTACW	2 cut(s)	266, 623
TauI	GCSGC	2 cut(s)	351, 705
TfiI	GAWTC	3 cut(s)	116, 151, 179
Tru1I	TTAA	5 cut(s)	210, 237, 480, 1248, 1286
Tru9I	TTAA	5 cut(s)	210, 237, 480, 1248, 1286
TscAI	CASTG	6 cut(s)	222, 424, 430, 712, 786, 1229
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	5 cut(s)	410, 500, 848, 881, 1118
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	4 cut(s)	882, 996, 1207, 1247
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	6 cut(s)	222, 424, 430, 712, 786, 1229
Vha464I	CTTAAG	1 cut(s)	1285
XapI	RAATTY	4 cut(s)	98, 485, 552, 1002
XbaI	TCTAGA	1 cut(s)	994
XceI	RCATGY	1 cut(s)	1056
XmaJI	CCTAGG	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	44, 932
Zsp2I	ATGCAT	2 cut(s)	586, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.