Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

48011119 .. 48012177

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTGGACGTAGGCTTTCCATGTTGAAGTCACTTTGCAAGTCTACCAATTGCTCTCTCAACCCAATGTCGTTTCAGTTGTCTAGTTCTTATGGGAAATTTGTGTGCTATGCTGATTCAGTTCTTGTAAGACCATCGTATGCTTTTGTGAATCGCGGTTACCATACGAAGGAAACAGAATCCCATAAAACTTTTGCAAATACTCAGATTAAAGCACTGGGTTCTGGATCACTTGTTAATACACGATGTTACGGAACCAAACCTAGTACAGCATTTTCACCCACATTGTCAAGTTCACTTAGTAGGTGTGCTTTTCCTCCTGTTTCGATAAGCCCAATTCTGGGTTGCCGTTCATACTCATCATTTTTCGGTAGCAATGCTGATAAAGATGGGCAACCTGGAGTTCCGGCTGCTGCCAGTGGCAGTGAAGTAGATGTTGGTAATAGTGGCGTTGGTGGAAGTGATTTGGTTGATAAGGTTAAGGAATTCGTGCAGAGTGCTGCAGATGCGGTAACTCATACCGGGCAGAAGGCTAAAGAAGCATCTAGTGAAATTTCCCCTTATGTTCAGCAATTGTTGGATGCATATCCACATCTTAGAAATGTGGTTACTCCAGTTGGTTGTACTTTGGCAGGTACTATATTTGCTTGGCTAGTGATGCCTAGGCTTTTCAGGAGATTTCACAAGTACGCAAGTCTAGGCCGCACTGCTTTACTATCTGGAAGCCTTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGCGATACCTATTTACTTTTATGGCATTTTCACAGATGTTAGTGGTTTTAAGTTTTCAATGCTCCTTAATCATATTTTTGTTAACTTATATGCTTCGTTTTGTTTTTCACTGCATTAAGACAACTAGGAACTTTGATTTGCAGTGGCACAATGGTTGCACCAACCGCTATAGCTGCTCAATAACTTGCACCAGCTTGGAGAGGTGCAGCTATCATTTCATTTGTTTGGTTTCTATATCGGTGGAAGACAAATGTGTATACTCGTGCATTAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

352

Amino Acids

38.75

Weight (kDa)

8.87

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AccI	GTMKAC	2 cut(s)	44, 1038
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	156, 509, 703, 946
AclWI	GGATC	3 cut(s)	235, 770, 783
AcsI	RAATTY	3 cut(s)	98, 485, 552
AfaI	GTAC	4 cut(s)	268, 625, 637, 689
AfiI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
AgsI	TTSAA	2 cut(s)	28, 839
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	954, 975, 990
AluI	AGCT	3 cut(s)	954, 975, 990
AlwI	GGATC	3 cut(s)	235, 770, 783
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	5 cut(s)	410, 413, 500, 954, 987
ApoI	RAATTY	3 cut(s)	98, 485, 552
AspA2I	CCTAGG	1 cut(s)	662
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	270
AvrII	CCTAGG	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	1042
BbsI	GAAGAC	1 cut(s)	1032
BbvI	GCAGC	5 cut(s)	397, 400, 487, 941, 999
BccI	CCATC	2 cut(s)	142, 383
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	523
BfaI	CTAG	7 cut(s)	84, 264, 546, 653, 663, 698, 906
BfmI	CTRYAG	2 cut(s)	501, 949
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	411, 414, 501, 703, 955, 988
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	6 cut(s)	412, 415, 502, 704, 956, 989
Bme1390I	CCNGG	2 cut(s)	399, 523
BmiI	GGNNCC	2 cut(s)	256, 777
BmrFI	CCNGG	2 cut(s)	399, 523
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	4 cut(s)	496, 551, 571, 648
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	1032
BpmI	CTGGAG	2 cut(s)	420, 597
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 340, 341
Bse1I	ACTGG	4 cut(s)	222, 417, 614, 779
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	4 cut(s)	222, 417, 614, 779
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	5 cut(s)	397, 400, 487, 941, 999
BsgI	GTGCAG	2 cut(s)	512, 1006
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	702
BsiSI	CCGG	2 cut(s)	407, 522
BslI	CCNNNNNNNGG	3 cut(s)	169, 340, 341
BsnI	GGCC	1 cut(s)	702
Bsp143I	GATC	2 cut(s)	227, 775
BspACI	CCGC	4 cut(s)	156, 509, 703, 946
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	256, 777
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	3 cut(s)	235, 770, 783
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	4 cut(s)	222, 417, 614, 779
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	2 cut(s)	227, 775
BssNAI	GTATAC	1 cut(s)	1039
BssSI	CACGAG	1 cut(s)	1042
BssT1I	CCWWGG	1 cut(s)	662
Bst1107I	GTATAC	1 cut(s)	1039
Bst2BI	CACGAG	1 cut(s)	1042
Bst2UI	CCWGG	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	204, 299, 596
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	230, 778
BstMBI	GATC	2 cut(s)	227, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	506, 539, 658, 945, 954
BstNI	CCWGG	1 cut(s)	399
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	397, 521
BstSFI	CTRYAG	2 cut(s)	501, 949
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	397, 400, 487, 941, 999
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BstZ17I	GTATAC	1 cut(s)	1039
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	4 cut(s)	430, 705, 889, 929
BtsIMutI	CAGTG	7 cut(s)	215, 424, 430, 705, 786, 889, 929
BveI	ACCTGC	1 cut(s)	623
Csp6I	GTAC	4 cut(s)	267, 624, 636, 688
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	4 cut(s)	267, 624, 636, 688
DdeI	CTNAG	3 cut(s)	204, 299, 596
DpnI	GATC	2 cut(s)	229, 777
DpnII	GATC	2 cut(s)	227, 775
Eco130I	CCWWGG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	1 cut(s)	25
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	745
FblI	GTMKAC	2 cut(s)	44, 1038
Fnu4HI	GCNGC	6 cut(s)	411, 414, 501, 703, 955, 988
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	6 cut(s)	411, 414, 501, 703, 955, 988
FspBI	CTAG	7 cut(s)	84, 264, 546, 653, 663, 698, 906
GluI	GCNGC	6 cut(s)	411, 414, 501, 703, 955, 988
GsuI	CTGGAG	2 cut(s)	420, 597
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	2 cut(s)	407, 522
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HinfI	GANTC	3 cut(s)	116, 151, 179
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	2 cut(s)	407, 522
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	4 cut(s)	45, 296, 864, 1039
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	225, 673, 720
Hpy8I	GTNNAC	4 cut(s)	45, 296, 864, 1039
HpyAV	CCTTC	2 cut(s)	163, 523
HpyCH4IV	ACGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	5 cut(s)	506, 539, 658, 945, 954
HpyF3I	CTNAG	3 cut(s)	204, 299, 596
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	2 cut(s)	227, 775
LmnI	GCTCC	2 cut(s)	733, 848
Lsp1109I	GCAGC	5 cut(s)	397, 400, 487, 941, 999
LweI	GCATC	4 cut(s)	496, 551, 571, 648
MaeI	CTAG	7 cut(s)	84, 264, 546, 653, 663, 698, 906
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	5 cut(s)	30, 158, 248, 511, 607
MalI	GATC	2 cut(s)	229, 777
MboI	GATC	2 cut(s)	227, 775
MboII	GAAGA	1 cut(s)	1037
MfeI	CAATTG	2 cut(s)	49, 572
MflI	RGATCY	1 cut(s)	775
MluCI	AATT	6 cut(s)	49, 98, 336, 485, 552, 572
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	4 cut(s)	327, 724, 766, 975
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	7 cut(s)	210, 237, 480, 830, 848, 863, 897
MspI	CCGG	2 cut(s)	407, 522
MspR9I	CCNGG	2 cut(s)	399, 523
MunI	CAATTG	2 cut(s)	49, 572
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	506, 539, 658, 945, 954
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	227, 775
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	256, 777
NmuCI	GTSAC	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	116, 151, 179
PkrI	GCNGC	6 cut(s)	412, 415, 502, 704, 956, 989
Psp6I	CCWGG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	256, 777
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	4 cut(s)	268, 625, 637, 689
RsaNI	GTAC	4 cut(s)	267, 624, 636, 688
SaqAI	TTAA	7 cut(s)	210, 237, 480, 830, 848, 863, 897
SatI	GCNGC	6 cut(s)	411, 414, 501, 703, 955, 988
Sau3AI	GATC	2 cut(s)	227, 775
ScrFI	CCNGG	2 cut(s)	399, 523
SfaNI	GCATC	4 cut(s)	496, 551, 571, 648
SfcI	CTRYAG	2 cut(s)	501, 949
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	6 cut(s)	49, 98, 336, 485, 552, 572
SsiI	CCGC	4 cut(s)	156, 509, 703, 946
SspMI	CTAG	7 cut(s)	84, 264, 546, 653, 663, 698, 906
StyD4I	CCNGG	2 cut(s)	397, 521
StyI	CCWWGG	1 cut(s)	662
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	326
TasI	AATT	6 cut(s)	49, 98, 336, 485, 552, 572
TatI	WGTACW	2 cut(s)	266, 623
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	3 cut(s)	116, 151, 179
Tru1I	TTAA	7 cut(s)	210, 237, 480, 830, 848, 863, 897
Tru9I	TTAA	7 cut(s)	210, 237, 480, 830, 848, 863, 897
TscAI	CASTG	7 cut(s)	222, 424, 430, 712, 786, 896, 929
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	5 cut(s)	410, 413, 500, 954, 987
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	342, 988
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	7 cut(s)	222, 424, 430, 712, 786, 896, 929
XapI	RAATTY	3 cut(s)	98, 485, 552
XmaJI	CCTAGG	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	44, 1038
XspI	CTAG	7 cut(s)	84, 264, 546, 653, 663, 698, 906
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.