Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

32035508 .. 32043661

Gene Structure 8154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG146800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGGCTGTCTGCCAGTCTACCACTATGCTTTGCTTGGCTATCTATCCAGTACTAGATTTCGCAACAAGTTCAAGCAGAAATGGAGGCCATGCTCCAGTCGATCAGGAATTGCTGGAACAGAAACATGTATTATCTCTACAGTTTGAAGCAATTGTGATTGTGAACAAGTCACGTGCTCAATGGCGTGGCATCATCACCAGAATTCCCCTGCAAATCAATGATGATTTGGATAAGGTTCCTCAGATATCAGATGATATAAAAAGCATGCTTAGATCTCACCCGAAGGTTTTCTTGGGAAAGGAGGTGCCTTATTGTTTCCTTTCTCATCTAGAGAGCTCATTTGGAGAATTGACTCTTGGATGTAACCTCAAACAGATGAGCAAGGACGAGTTATTCTCTACAGAAGAAGATATCCTTTTGCGGTCGGTCAAGATAATTAAGGGGCATGGCGCCAAGTTGGGCAGCACCTATGGTGATATGACCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

164

Amino Acids

18.27

Weight (kDa)

6.51

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	307, 452
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	204
AcvI	CACGTG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	75, 149
AjuI	GAANNNNNNNTTGG	4 cut(s)	278, 310, 342, 374
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	2 cut(s)	181, 341
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	190, 272, 488
BanI	GGYRCC	2 cut(s)	307, 452
BanII	GRGCYC	1 cut(s)	341
BbrPI	CACGTG	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	181, 341
BbvI	GCAGC	1 cut(s)	477
BfaI	CTAG	2 cut(s)	56, 332
BfmI	CTRYAG	2 cut(s)	140, 402
BfoI	RGCGCY	1 cut(s)	456
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	54
BmiI	GGNNCC	3 cut(s)	240, 309, 454
BmsI	GCATC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	453
Bse1I	ACTGG	3 cut(s)	16, 50, 98
BseGI	GGATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	3 cut(s)	16, 50, 98
BseXI	GCAGC	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	307, 452
BsiEI	CGRYCG	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	181, 341
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	181, 341
Bsp143I	GATC	2 cut(s)	103, 275
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	240, 309, 454
BspT107I	GGYRCC	2 cut(s)	307, 452
BsrI	ACTGG	3 cut(s)	16, 50, 98
BssMI	GATC	2 cut(s)	103, 275
BssNI	GRCGYC	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	243, 272
BstF5I	GGATG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	106, 278
BstMBI	GATC	2 cut(s)	103, 275
BstMCI	CGRYCG	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	131, 271
BstSFI	CTRYAG	2 cut(s)	140, 402
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	4 cut(s)	92, 128, 268, 449
CviJI	RGCY	4 cut(s)	8, 41, 90, 339
CviKI_1	RGCY	4 cut(s)	8, 41, 90, 339
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	243, 272
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	2 cut(s)	105, 277
DpnII	GATC	2 cut(s)	103, 275
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	341
Eco32I	GATATC	2 cut(s)	249, 415
Eco53kI	GAGCTC	1 cut(s)	339
Eco72I	CACGTG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	204
EcoRV	GATATC	2 cut(s)	249, 415
EcoT38I	GRGCYC	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
FaeI	CATG	4 cut(s)	95, 131, 271, 452
FaiI	YATR	9 cut(s)	29, 93, 129, 260, 269, 450, 474, 482, 493
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 402, 434
FatI	CATG	4 cut(s)	91, 127, 267, 448
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	2 cut(s)	56, 332
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	95, 131, 271, 452
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	3 cut(s)	190, 272, 488
Hpy166II	GTNNAC	2 cut(s)	21, 166
Hpy188I	TCNGA	2 cut(s)	246, 253
Hpy188III	TCNNGA	3 cut(s)	107, 332, 433
Hpy8I	GTNNAC	2 cut(s)	21, 166
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	243, 272
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	4 cut(s)	95, 131, 271, 452
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	103, 275
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	7 cut(s)	29, 63, 92, 101, 111, 214, 224
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	56, 332
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	171, 365
MalI	GATC	2 cut(s)	105, 277
MboI	GATC	2 cut(s)	103, 275
MboII	GAAGA	2 cut(s)	419, 422
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	181, 341
MluCI	AATT	5 cut(s)	110, 153, 204, 350, 438
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	4 cut(s)	80, 252, 298, 380
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	441
MunI	CAATTG	1 cut(s)	153
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	2 cut(s)	103, 275
NlaIII	CATG	4 cut(s)	95, 131, 271, 452
NlaIV	GGNNCC	3 cut(s)	240, 309, 454
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	2 cut(s)	131, 271
PaeI	GCATGC	1 cut(s)	271
PciI	ACATGT	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	349
PluTI	GGCGCC	1 cut(s)	456
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	176
PscI	ACATGT	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	341
PspCI	CACGTG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	240, 309, 454
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	103, 275
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	181, 341
SetI	ASST	7 cut(s)	178, 240, 291, 309, 341, 372, 473
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	140, 402
SfoI	GGCGCC	1 cut(s)	454
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	5 cut(s)	110, 153, 204, 350, 438
SsiI	CCGC	1 cut(s)	424
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	2 cut(s)	56, 332
SstI	GAGCTC	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	418
TasI	AATT	5 cut(s)	110, 153, 204, 350, 438
TatI	WGTACW	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	204
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	2 cut(s)	131, 271
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	2 cut(s)	56, 332
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.