Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

17241202 .. 17245126

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1068400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTACTATATATTTGCTTGGTTGGTGATGCCTAGGCTTTTCAGGAGATTTCACATGTACGGAAATCCATCTGAAGAGCAAGTTCCATACGAGAAAAGTTTTTTGGGTGCTCTGGAGGACCCAGTGCGATATCTGGTTACTTTCATGGCATTTTCACAAAGGGTTGGCATCATGGTAGCACCGACCACTATAACTGCTCAGTATCTTGCACCAGCATGGAGAGGTGCAGTTATCCTTTCATTTGTGTGGTTTCTACATCGGTGGAAGACAAATGTGTTCACTCCTGCATTAGCGACTCAAAGTTTGCCTGGTCTTGATCGGGACCAGTTGCTAGCTATTGACAACATTTCATCCGTTGGTCTTTTTGTGATTGGGATAATGGCTTTAGCTGAGGCGTGTGGGGTGGCGGTGCAATCAATTATGACAGTTGGTGGCATAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACATCCTTGGAAATGTTCTGAGTGGCTGGATCTATAGAAGGTCAAGCGGTGGAAATGGGACTTCTACTACTTGTTTACTGAATGCCGAGAAGTTCCCTGTCATAGTTCCTAATTCTCTCTTTTCTAGTCAGGTATTTGTAAACAAGTCACGTGCGCAATGGCGTGCCATCATCACCAAAATTCCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

220

Amino Acids

24.17

Weight (kDa)

9.74

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	624
AciI	CCGC	2 cut(s)	407, 516
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	5, 59
AflIII	ACRYGT	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	335, 389
AluI	AGCT	2 cut(s)	335, 389
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	648
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	118, 322
AsuHPI	GGTGA	2 cut(s)	37, 634
AsuNHI	GCTAGC	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	118, 322
AvrII	CCTAGG	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	76, 644
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	3 cut(s)	33, 332, 594
BfmI	CTRYAG	1 cut(s)	502
BisI	GCNGC	1 cut(s)	462
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	118, 322
BmgT120I	GGNCC	2 cut(s)	118, 322
BmiI	GGNNCC	2 cut(s)	120, 323
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	18, 177
BmtI	GCTAGC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	32, 475
Bse1I	ACTGG	2 cut(s)	122, 325
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	32, 475
BseGI	GGATG	2 cut(s)	350, 471
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	212, 381, 479
BseNI	ACTGG	2 cut(s)	122, 325
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	335, 541
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	2 cut(s)	335, 541
BsmI	GAATGC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	316, 498
BspACI	CCGC	2 cut(s)	407, 516
BspCNI	CTCAG	3 cut(s)	211, 382, 480
BspLI	GGNNCC	2 cut(s)	120, 323
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	122, 325
BssECI	CCNNGG	2 cut(s)	32, 475
BssMI	GATC	2 cut(s)	316, 498
BssT1I	CCWWGG	2 cut(s)	32, 475
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	333, 633
BstDEI	CTNAG	3 cut(s)	198, 390, 488
BstF5I	GGATG	2 cut(s)	350, 471
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	2 cut(s)	319, 501
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	316, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	350, 471
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	333, 633
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	118, 322
Csp6I	GTAC	2 cut(s)	4, 58
CviAII	CATG	4 cut(s)	55, 145, 172, 216
CviJI	RGCY	5 cut(s)	37, 335, 383, 389, 495
CviKI_1	RGCY	5 cut(s)	37, 335, 383, 389, 495
CviQI	GTAC	2 cut(s)	4, 58
DdeI	CTNAG	3 cut(s)	198, 390, 488
DpnI	GATC	2 cut(s)	318, 500
DpnII	GATC	2 cut(s)	316, 498
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	32, 475
Eco32I	GATATC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	118, 322
Eco57I	CTGAAG	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	32, 475
ErhI	CCWWGG	2 cut(s)	32, 475
FaeI	CATG	4 cut(s)	58, 148, 175, 219
FaqI	GGGAC	2 cut(s)	335, 541
FatI	CATG	4 cut(s)	54, 144, 171, 215
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	2 cut(s)	337, 458
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	3 cut(s)	33, 332, 594
FspI	TGCGCA	1 cut(s)	624
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	58, 148, 175, 219
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	2 cut(s)	37, 634
Hpy166II	GTNNAC	3 cut(s)	279, 545, 610
Hpy188I	TCNGA	2 cut(s)	73, 489
Hpy188III	TCNNGA	4 cut(s)	43, 113, 314, 320
Hpy8I	GTNNAC	3 cut(s)	279, 545, 610
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	4 cut(s)	209, 227, 287, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	198, 390, 488
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	4 cut(s)	58, 148, 175, 219
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	316, 498
LguI	GCTCTTC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	2 cut(s)	18, 177
MaeI	CTAG	3 cut(s)	33, 332, 594
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	2 cut(s)	136, 615
MalI	GATC	2 cut(s)	318, 500
MboI	GATC	2 cut(s)	316, 498
MboII	GAAGA	2 cut(s)	86, 277
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	417, 580, 648
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	109, 215, 385, 434
MslI	CAYNNNNRTG	2 cut(s)	214, 244
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	2 cut(s)	316, 498
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	58, 148, 175, 219
NlaIV	GGNNCC	2 cut(s)	120, 323
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	615
NsbI	TGCGCA	1 cut(s)	624
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	120, 323
PspPI	GGNCC	2 cut(s)	118, 322
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	2 cut(s)	5, 59
RsaNI	GTAC	2 cut(s)	4, 58
RseI	CAYNNNNRTG	2 cut(s)	214, 244
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	316, 498
Sau96I	GGNCC	2 cut(s)	118, 322
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	226, 337, 391, 512, 603, 622
SfaNI	GCATC	2 cut(s)	18, 177
SfcI	CTRYAG	1 cut(s)	502
SinI	GGWCC	2 cut(s)	118, 322
SmiMI	CAYNNNNRTG	2 cut(s)	214, 244
Sse9I	AATT	3 cut(s)	417, 580, 648
SsiI	CCGC	2 cut(s)	407, 516
SspMI	CTAG	3 cut(s)	33, 332, 594
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	2 cut(s)	32, 475
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	622
TasI	AATT	3 cut(s)	417, 580, 648
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	3 cut(s)	133, 228, 339
TspGWI	ACGGA	2 cut(s)	75, 343
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	118, 322
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	32
XspI	CTAG	3 cut(s)	33, 332, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.