RLG00000028058

Mechanosensitive ion channel protein 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
18161309 .. 18164403
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028058

Sequence Viewer

Length: 1647 bp
ATGACTGGACGTAGGCTTTCCATGTTGAAGTCACTTTGCAAGTCTACCAATGGCTCTCTCAACCCAATGTCGTTTCAGTTGTCTAGTTCTTATGGGAAATTTGTGAGCTATGCTGATTCAATTCTTGTAAGACCATCGTATGCTTTTGTGAATCGCGGTTACCATACGAAGGAAACAGAATCCCATAAAACTTTTGCAAATACTCAGATTAAAGCACGGGGTTCTGGATCACTTGTTAATACACGATGTTATGGAATCAAACCCATTACAGCATTTTCACCCACATTGTCAAGTTCACTTAGTAGGTGTGCTTTTCCTCCTGTTTCGATAAGCCCAATTCTGGGTTGCCGTTCATTCTCATCATTTTTCAGTAGCAATGCTGATAAAGATGGGCAACCTGGAGTTCCGGCTGTTTCCAGCGGCAGTGAAGTGGATGTTGGTAATAGTAGCGTTGGTGGAAGTGATTTGATTGATAAGGTTAAGGAATTTGTGCAGAGTGCTGCGGATGCGGTAACTCATACCGGGCAGAAGGCTAAAGAAGCATCTAGTGAAATGTCCCCTTATGTTCAGCAATTGTTGGATACATATCCACATCTTAGAAATGTGGTTACTCCAGTTGGTTGTACTTTGGCAGCTACTATATTTGCTTGGCTAGTGATGCCTAGGCTTTTCAGGAGGTTTCACAAGTATGCAAATCTAGGCCGCACTGCTTTACTATCTGGAAGCCTTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGAGCCAGTGCGATACCTATTTACTTTTATGGCATTTTCACAAATTGGCACAATGGTTGCACCAACCGCTATAGCTGCTCAGTATCTTGCTCCGGCTTGGAGAGGTGCAGTTATCCTTTCATTTGTTTGGTTTCTATATCGGTGGAAGACAAATGTGTTTACTCGTGCATTAGCAACTAAAAGTCTGCCCAGCAGTCTTGATCGGGAGAGGTTGTTAGCTCTAGACAAAATTTCATCTGTTGGTCTCTTTATGATTGGGATAATGGCTCTAGCTGAGGCATGTGGGGTGGCTGTGCAATCTATTATGACTGTTGGTGGCATAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGATGTCCTTGGCAATGTGCTGAGTGGTTTATCTATGCAATTTACAAAGCCCTTTTCACTAGGTGATACAATAAAGGCTGGATCCATAGAAGGTCAAGTGGTGGATATGGGACTTACAACCACTTCATTACTGAATGCTGAGAAGTTCCCAGTGATAGTTCCCAATTCACTCTTTTCTAGTCAGGTGATTGTGAACAAGTCACGTGCTCAGTGGCGTGGCATCGTCACCAGAATTCCGCTGCAAATTAATGATGATTTGGATAAGGTTCCCCAAATATCAGATGATATAAAAAGCATGCTGAGATCACACCCGAAGGTTTTCTTGGGAAAGGAGGTGCCTTATTGTTTCCTTTCTCGTCTAGAGAGCTCATTTGGAGAATTGACTCTTGGATGTAACCTCAAACATATGAGCAAGGATGAGTTATTCTCTACAGAAGAAGATATCCTTTTGCGGTCGGTCAAGATAATTAAGGGGCATGGTGCCAAGTTGGGCAGCACCTATGGTGATATGACCACTCCATAG

Protein Analysis

549

Amino Acids

59.51

Weight (kDa)

9.32

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MS_channel_2nd PF00924 376 - 443 3.8e-16 Mechanosensitive ion channel, beta-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1459, 1604
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 156
AciI CCGC 8 cut(s) 156, 420, 503, 509, 703, 840, 1361, 1576
AclWI GGATC 3 cut(s) 235, 1200, 1213
AcsI RAATTY 4 cut(s) 98, 485, 1002, 1356
AcvI CACGTG 1 cut(s) 1328
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 3 cut(s) 169, 340, 341
AgsI TTSAA 2 cut(s) 28, 120
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 6 cut(s) 420, 452, 1430, 1462, 1494, 1526
AluBI AGCT 6 cut(s) 108, 635, 848, 992, 1046, 1491
AluI AGCT 6 cut(s) 108, 635, 848, 992, 1046, 1491
Alw21I GWGCWC 2 cut(s) 1333, 1493
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 3 cut(s) 235, 1200, 1213
AoxI GGCC 1 cut(s) 700
ApeKI GCWGC 6 cut(s) 500, 632, 848, 1118, 1363, 1617
ApoI RAATTY 4 cut(s) 98, 485, 1002, 1356
AseI ATTAAT 1 cut(s) 1371
Asp700I GAANNNNTTC 1 cut(s) 1442
AspA2I CCTAGG 1 cut(s) 662
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 5 cut(s) 270, 1199, 1321, 1342, 1640
AvrII CCTAGG 1 cut(s) 662
BamHI GGATCC 1 cut(s) 1205
BanI GGYRCC 2 cut(s) 1459, 1604
BanII GRGCYC 1 cut(s) 1493
BauI CACGAG 1 cut(s) 936
BbrPI CACGTG 1 cut(s) 1328
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 2 cut(s) 1333, 1493
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 6 cut(s) 487, 644, 835, 1105, 1350, 1629
BccI CCATC 2 cut(s) 142, 383
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 1022
BfmI CTRYAG 2 cut(s) 843, 1554
BfuI GTATCC 1 cut(s) 574
BisI GCNGC 8 cut(s) 421, 501, 633, 703, 849, 1119, 1364, 1618
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 8 cut(s) 422, 502, 634, 704, 850, 1120, 1365, 1619
Bme1390I CCNGG 2 cut(s) 399, 523
BmiI GGNNCC 5 cut(s) 777, 1207, 1392, 1461, 1606
BmrFI CCNGG 2 cut(s) 399, 523
BmrI ACTGGG 1 cut(s) 1268
BmsI GCATC 4 cut(s) 496, 551, 648, 1353
BmuI ACTGGG 1 cut(s) 1268
BpiI GAAGAC 1 cut(s) 926
BplI GAGNNNNNCTC 2 cut(s) 1535, 1567
BpmI CTGGAG 2 cut(s) 420, 597
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 523
BsaAI YACGTR 1 cut(s) 1328
BsaBI GATNNNNATC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 1022
BsaJI CCNNGG 2 cut(s) 662, 1132
BsaXI ACNNNNNCTCC 2 cut(s) 971, 1001
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 340, 341
Bse1I ACTGG 4 cut(s) 10, 614, 779, 1274
Bse3DI GCAATG 2 cut(s) 382, 1144
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 662, 1132
BseGI GGATG 4 cut(s) 439, 511, 1520, 1546
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 3 cut(s) 169, 340, 341
BseMI GCAATG 2 cut(s) 382, 1144
BseMII CTCAG 7 cut(s) 218, 866, 1038, 1136, 1254, 1346, 1415
BseNI ACTGG 4 cut(s) 10, 614, 779, 1274
BseRI GAGGAG 3 cut(s) 746, 788, 1113
BseXI GCAGC 6 cut(s) 487, 644, 835, 1105, 1350, 1629
BseYI CCCAGC 1 cut(s) 962
BsgI GTGCAG 2 cut(s) 512, 900
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 1580
BshFI GGCC 1 cut(s) 702
BshNI GGYRCC 2 cut(s) 1459, 1604
BsiEI CGRYCG 1 cut(s) 1580
BsiHKAI GWGCWC 2 cut(s) 1333, 1493
BsiSI CCGG 3 cut(s) 407, 522, 866
BslFI GGGAC 2 cut(s) 541, 1248
BslI CCNNNNNNNGG 3 cut(s) 169, 340, 341
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 2 cut(s) 541, 1248
BsmI GAATGC 1 cut(s) 1264
BsnI GGCC 1 cut(s) 702
Bso31I GGTCTC 1 cut(s) 1022
Bsp1286I GDGCHC 2 cut(s) 1333, 1493
Bsp143I GATC 4 cut(s) 227, 973, 1205, 1427
BspACI CCGC 8 cut(s) 156, 420, 503, 509, 703, 840, 1361, 1576
BspANI GGCC 1 cut(s) 702
BspCNI CTCAG 7 cut(s) 217, 865, 1039, 1137, 1255, 1345, 1416
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 5 cut(s) 777, 1207, 1392, 1461, 1606
BspPI GGATC 3 cut(s) 235, 1200, 1213
BspT107I GGYRCC 2 cut(s) 1459, 1604
BspTNI GGTCTC 1 cut(s) 1022
BsrDI GCAATG 2 cut(s) 382, 1144
BsrI ACTGG 4 cut(s) 10, 614, 779, 1274
BssECI CCNNGG 2 cut(s) 662, 1132
BssMI GATC 4 cut(s) 227, 973, 1205, 1427
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 2 cut(s) 662, 1132
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 1084
BstBAI YACGTR 1 cut(s) 1328
BstC8I GCNNGC 1 cut(s) 1421
BstDEI CTNAG 9 cut(s) 204, 299, 596, 852, 1047, 1145, 1263, 1332, 1424
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 4 cut(s) 439, 511, 1520, 1546
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 4 cut(s) 230, 976, 1208, 1430
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 4 cut(s) 227, 973, 1205, 1427
BstMCI CGRYCG 1 cut(s) 1580
BstMWI GCNNNNNNNGC 6 cut(s) 506, 539, 658, 839, 848, 1118
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 2 cut(s) 1056, 1423
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 397, 521
BstSFI CTRYAG 2 cut(s) 843, 1554
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 6 cut(s) 487, 644, 835, 1105, 1350, 1629
BstV2I GAAGAC 1 cut(s) 926
BstX2I RGATCY 1 cut(s) 1205
BstYI RGATCY 1 cut(s) 1205
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 1 cut(s) 702
BtsCI GGATG 4 cut(s) 439, 511, 1520, 1546
BtsI GCAGTG 2 cut(s) 430, 705
BtsIMutI CAGTG 5 cut(s) 430, 705, 786, 1281, 1340
Cac8I GCNNGC 1 cut(s) 1421
Csp6I GTAC 1 cut(s) 624
CviAII CATG 4 cut(s) 22, 1053, 1420, 1601
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 9 cut(s) 204, 299, 596, 852, 1047, 1145, 1263, 1332, 1424
DpnI GATC 4 cut(s) 229, 975, 1207, 1429
DpnII GATC 4 cut(s) 227, 973, 1205, 1427
DraIII CACNNNGTG 1 cut(s) 1187
Ecl136II GAGCTC 1 cut(s) 1491
Eco130I CCWWGG 2 cut(s) 662, 1132
Eco24I GRGCYC 1 cut(s) 1493
Eco31I GGTCTC 1 cut(s) 1022
Eco32I GATATC 1 cut(s) 1567
Eco53kI GAGCTC 1 cut(s) 1491
Eco72I CACGTG 1 cut(s) 1328
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 1491
EcoO65I GGTNACC 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 1356
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 1567
EcoT14I CCWWGG 2 cut(s) 662, 1132
EcoT38I GRGCYC 1 cut(s) 1493
ErhI CCWWGG 2 cut(s) 662, 1132
FaeI CATG 4 cut(s) 25, 1056, 1423, 1604
FalI AAGNNNNNCTT 4 cut(s) 1430, 1462, 1554, 1586
FaqI GGGAC 2 cut(s) 541, 1248
FatI CATG 4 cut(s) 21, 1052, 1419, 1600
FauNDI CATATG 2 cut(s) 745, 1530
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 8 cut(s) 421, 501, 633, 703, 849, 1119, 1364, 1618
FokI GGATG 4 cut(s) 446, 518, 1527, 1553
FriOI GRGCYC 1 cut(s) 1493
Fsp4HI GCNGC 8 cut(s) 421, 501, 633, 703, 849, 1119, 1364, 1618
GluI GCNGC 8 cut(s) 421, 501, 633, 703, 849, 1119, 1364, 1618
GsaI CCCAGC 1 cut(s) 966
GsuI CTGGAG 2 cut(s) 420, 597
HaeIII GGCC 1 cut(s) 702
HapII CCGG 3 cut(s) 407, 522, 866
Hin1II CATG 4 cut(s) 25, 1056, 1423, 1604
HinfI GANTC 5 cut(s) 116, 151, 179, 255, 1507
HpaII CCGG 3 cut(s) 407, 522, 866
HphI GGTGA 5 cut(s) 270, 1199, 1321, 1342, 1640
Hpy166II GTNNAC 4 cut(s) 45, 296, 933, 1318
Hpy188I TCNGA 2 cut(s) 207, 1405
Hpy188III TCNNGA 8 cut(s) 225, 673, 720, 971, 977, 995, 1484, 1585
Hpy8I GTNNAC 4 cut(s) 45, 296, 933, 1318
HpyAV CCTTC 4 cut(s) 163, 523, 1208, 1432
HpyCH4III ACNGT 1 cut(s) 1084
HpyCH4IV ACGT 2 cut(s) 10, 1327
HpyF10VI GCNNNNNNNGC 6 cut(s) 506, 539, 658, 839, 848, 1118
HpyF3I CTNAG 9 cut(s) 204, 299, 596, 852, 1047, 1145, 1263, 1332, 1424
HpySE526I ACGT 2 cut(s) 10, 1327
Hsp92II CATG 4 cut(s) 25, 1056, 1423, 1604
Kzo9I GATC 4 cut(s) 227, 973, 1205, 1427
LmnI GCTCC 3 cut(s) 733, 775, 868
Lsp1109I GCAGC 6 cut(s) 487, 644, 835, 1105, 1350, 1629
LweI GCATC 4 cut(s) 496, 551, 648, 1353
MaeII ACGT 2 cut(s) 10, 1327
MaeIII GTNAC 7 cut(s) 30, 158, 511, 607, 1323, 1348, 1517
MalI GATC 4 cut(s) 229, 975, 1207, 1429
MboI GATC 4 cut(s) 227, 973, 1205, 1427
MboII GAAGA 3 cut(s) 931, 1571, 1574
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 1205
MhlI GDGCHC 2 cut(s) 1333, 1493
MlyI GAGTC 1 cut(s) 1501
MmeI TCCRAC 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 1442
MseI TTAA 5 cut(s) 210, 237, 480, 1371, 1593
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 2 cut(s) 420, 1363
MspI CCGG 3 cut(s) 407, 522, 866
MspR9I CCNGG 2 cut(s) 399, 523
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 1 cut(s) 1264
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 6 cut(s) 506, 539, 658, 839, 848, 1118
NciI CCSGG 1 cut(s) 523
NdeI CATATG 2 cut(s) 745, 1530
NdeII GATC 4 cut(s) 227, 973, 1205, 1427
NlaIII CATG 4 cut(s) 25, 1056, 1423, 1604
NlaIV GGNNCC 5 cut(s) 777, 1207, 1392, 1461, 1606
NmuCI GTSAC 3 cut(s) 30, 1323, 1348
NspI RCATGY 2 cut(s) 1056, 1423
PaeI GCATGC 1 cut(s) 1423
PctI GAATGC 1 cut(s) 1264
PdmI GAANNNNTTC 1 cut(s) 1442
PfeI GAWTC 4 cut(s) 116, 151, 179, 255
PkrI GCNGC 8 cut(s) 422, 502, 634, 704, 850, 1120, 1365, 1619
PleI GAGTC 1 cut(s) 1501
PmaCI CACGTG 1 cut(s) 1328
PmlI CACGTG 1 cut(s) 1328
PpsI GAGTC 1 cut(s) 1501
Ppu21I YACGTR 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 1493
Psp6I CCWGG 1 cut(s) 397
PspCI CACGTG 1 cut(s) 1328
PspEI GGTNACC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 962
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 5 cut(s) 777, 1207, 1392, 1461, 1606
PsuI RGATCY 1 cut(s) 1205
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 1 cut(s) 1493
SaqAI TTAA 5 cut(s) 210, 237, 480, 1371, 1593
SatI GCNGC 8 cut(s) 421, 501, 633, 703, 849, 1119, 1364, 1618
Sau3AI GATC 4 cut(s) 227, 973, 1205, 1427
SchI GAGTC 1 cut(s) 1501
ScrFI CCNGG 2 cut(s) 399, 523
SduI GDGCHC 2 cut(s) 1333, 1493
SfaNI GCATC 4 cut(s) 496, 551, 648, 1353
SfcI CTRYAG 2 cut(s) 843, 1554
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SphI GCATGC 1 cut(s) 1423
SsiI CCGC 8 cut(s) 156, 420, 503, 509, 703, 840, 1361, 1576
SstI GAGCTC 1 cut(s) 1493
StyD4I CCNGG 2 cut(s) 397, 521
StyI CCWWGG 2 cut(s) 662, 1132
TaaI ACNGT 1 cut(s) 1084
TaiI ACGT 2 cut(s) 13, 1330
TaqI TCGA 1 cut(s) 326
TaqII GACCGA 1 cut(s) 1570
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 423, 705
TfiI GAWTC 4 cut(s) 116, 151, 179, 255
Tru1I TTAA 5 cut(s) 210, 237, 480, 1371, 1593
Tru9I TTAA 5 cut(s) 210, 237, 480, 1371, 1593
TscAI CASTG 5 cut(s) 430, 712, 786, 1281, 1340
TseFI GTSAC 3 cut(s) 30, 1323, 1348
TseI GCWGC 6 cut(s) 500, 632, 848, 1118, 1363, 1617
Tsp45I GTSAC 3 cut(s) 30, 1323, 1348
TspDTI ATGAA 4 cut(s) 342, 882, 996, 1239
TspRI CASTG 5 cut(s) 430, 712, 786, 1281, 1340
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 4 cut(s) 98, 485, 1002, 1356
XbaI TCTAGA 2 cut(s) 994, 1483
XceI RCATGY 2 cut(s) 1056, 1423
XmaJI CCTAGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.