Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Reverse (-)

19603900 .. 19606206

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGCGCTGCGGTTGCGGGACAAACCCTCTGGACATCCCGGATCAATTTGCAGTCGGATTGGTGTCCGCACCGTTCGCGGGATTGAGACAAGCTCCGAGTTCGACCATCAACTGCAGTCGCTTGTTGGGGATAGGATAGTGATTTTAAAATTCATGGGGTTTGTTTCTGGATTGATCATTCAATGTAGTTACTCCAGTTGGTTGTACTTTGGCGGTACTACATTTGCTTGGCTAGTGATGCCTAGGCTTTTCGGGAGGTTTCACAAGTACACAAGTCTAGGCCGCATCGCTTTACTATCCGGAAGCCTTGAGGAGCAAGTTCCATATGAGAAAATTTTTTGGGGTGCTTTGGAGGATCCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

122

Amino Acids

13.7

Weight (kDa)

9.1

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	6 cut(s)	13, 19, 70, 81, 216, 286
AclWI	GGATC	3 cut(s)	52, 353, 366
AcsI	RAATTY	2 cut(s)	152, 336
AfaI	GTAC	3 cut(s)	209, 220, 272
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	52, 353, 366
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	5, 10
ApoI	RAATTY	2 cut(s)	152, 336
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	42
AvrII	CCTAGG	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	358
BccI	CCATC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	236, 246, 281
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	6, 11, 286
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	3 cut(s)	7, 12, 287
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	231, 297
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	198, 362
BseAI	TCCGGA	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	198, 362
BseRI	GAGGAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	42, 303
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	44, 177, 358
BspACI	CCGC	6 cut(s)	13, 19, 70, 81, 216, 286
BspANI	GGCC	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	3 cut(s)	52, 353, 366
BsrI	ACTGG	2 cut(s)	198, 362
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	44, 177, 358
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	47, 180, 361
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	44, 177, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 78, 241
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	369
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	208, 219, 271
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	6 cut(s)	5, 96, 235, 250, 285, 309
CviKI_1	RGCY	6 cut(s)	5, 96, 235, 250, 285, 309
CviQI	GTAC	3 cut(s)	208, 219, 271
DpnI	GATC	3 cut(s)	46, 179, 360
DpnII	GATC	3 cut(s)	44, 177, 358
DraI	TTTAAA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	158, 328, 330
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	156
FauI	CCCGC	2 cut(s)	12, 74
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	6, 11, 286
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	6, 11, 286
FspBI	CTAG	3 cut(s)	236, 246, 281
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	6, 11, 286
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	42, 303
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	42, 303
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	60, 100
Hpy188III	TCNNGA	4 cut(s)	33, 171, 256, 303
Hpy8I	GTNNAC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	54, 118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 78, 241
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	44, 177, 358
LmnI	GCTCC	2 cut(s)	101, 316
LpnPI	CCDG	5 cut(s)	18, 55, 156, 211, 316
LweI	GCATC	2 cut(s)	231, 297
MaeI	CTAG	3 cut(s)	236, 246, 281
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	46, 179, 360
MboI	GATC	3 cut(s)	44, 177, 358
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	3 cut(s)	48, 152, 336
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	40, 252, 307, 349
MroI	TCCGGA	1 cut(s)	302
MseI	TTAA	1 cut(s)	149
MspI	CCGG	2 cut(s)	42, 303
MspR9I	CCNGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	16, 78, 241
NciI	CCSGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	3 cut(s)	44, 177, 358
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	360
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	7, 12, 287
PspN4I	GGNNCC	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	3 cut(s)	209, 220, 272
RsaNI	GTAC	3 cut(s)	208, 219, 271
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	3 cut(s)	6, 11, 286
Sau3AI	GATC	3 cut(s)	44, 177, 358
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	2 cut(s)	98, 263
SfaNI	GCATC	2 cut(s)	231, 297
SfcI	CTRYAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	48, 152, 336
SsiI	CCGC	6 cut(s)	13, 19, 70, 81, 216, 286
SspMI	CTAG	3 cut(s)	236, 246, 281
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	48, 152, 336
TatI	WGTACW	2 cut(s)	207, 270
TauI	GCSGC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	2 cut(s)	5, 10
TspDTI	ATGAA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	152, 336
XmaJI	CCTAGG	1 cut(s)	245
XspI	CTAG	3 cut(s)	236, 246, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.