FvH4_7g15010

Mechanosensitive ion channel protein 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
13101543 .. 13105497
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15010.t2

Sequence Viewer

Length: 1623 bp
ATGGCTGGACGGAGGCTTTTGATATTGAAGTCACTCTGCAAGTCTTCCAACACAATGTCGTGTCAGTCGTATAGTTCTTATGGGAAATGTGTGAACTATGCTGATCCAGTTCTTGTTAGACCATCGTATGCTTTTGTGAGTCGTGGATACCATACTAAGGAAACACAGTCTAGCAAAGATTTTGCGAATACTCAGTTTGGAGCAATGGGTTCTGGATCACTTGTCAATGCACGAAGTTACAGAACCAAACCGATTTCAGCATTTTCATCGACATTATCCAGTTCACATAGTAGGTTTGCTTTTGCTCCTGTTTCGGTAAGCCCAGTTCTGGATTGCCGTTCATACTCATCACTTTTTGGTAGCAATGCTGATAAAGGTGGGCAACCTGGAGTTCCGGCTGCTTCCAGTGGCGGTGAAGTGGATGTTGGTAATAGCGCTGTTGGTGGAAGTGATTTGGTTGATAAGGTTAAGGAATTCGTGCAGAATGCAGTGGACGCAGCGACTTATACTGGGCAAAAGGCTAAGGAAGCATCTGGTGAAATGTCCCCATATGTTCAGCAGTTGTTGGATACATATCCACATCTTAGAAATGTGGTTGCTCCAGTTGGTTATACTTTGGCAGGTACTGTATTTGCTTGGGTAGTGATGCCTAGGCTTTTCCGGAGGTTTCACAAGTATGCCAATCAAGGCCGCAATGCTTTGCTATCTCAAAGCCCATCTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGAGATACCTTTTTACTTTTATGGCATTTTCACAAATTGGCACAATGGTTGCACCAACTGCTATAGCTGCTCAATATCTTGCACCAGCTTGGAGTGGTGCAGTTATCCTTTCATTTGTTTGGTTTCTCTATCGGTGGAAGACCAATGTGTTCACTCGTGCGTTAGCAAATAAAAGTCTGCCCAGCAGTCTTGATCGAGAGAGGTTGTTAGCTCTAGACAAAATTTCATCTGTTGGTCTTTTTATGATTGGGATAATGGCTTTAGCTGAGGCATGTGGGGTGGCTGTGCAATCTATTATGACTGTTGGAGGCATAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTCCTTGGTAATGTGCTGAGTGGTTTATCCATGCAATTTACGAAGCCCTTTTCACTAGGTGATACAATAAAGGCTGGAACCATAGAAGGTCAAGTGGTGGAAATGGGACTTACAACTACTTCCTTACTGAATGCCGAGAAGTTTCCAGTGATAGTTCCCAATTCACTATTTTCTAGTCAAGTGATTGTGAACAAGTCACGTGCTCAATGGCGTGGCATGGTCACCAGAATTCCCCTGCAAATCAATGATGAGTTGGATAAGGTTCCCCAGATATCAGTTGATATAAAAAACATGCTGAGATCACACCCGAAGGTTTTCCTGGGAAAGGAAGTGCCTTACTGTTTCCTTTCTCGTTTAGAGAGCACATTTGGAGAATTGACTCTTGGATGTAACCTCAAACATATGAGCAAGGATGAGTTAGTCTCTACAGAAGAAGATATTCTTTTGCGGTCAGTCAAGATAATCAAGGGGCATGGTGCCAAGCTGGGCAGCACCTATATATAA

Protein Analysis

541

Amino Acids

58.52

Weight (kDa)

9.33

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 1595
AccIII TCCGGA 1 cut(s) 660
AciI CCGC 3 cut(s) 411, 691, 1567
AclWI GGATC 4 cut(s) 98, 223, 761, 774
AcsI RAATTY 3 cut(s) 473, 993, 1347
AcvI CACGTG 1 cut(s) 1319
AcyI GRCGYC 1 cut(s) 1119
AdeI CACNNNGTG 1 cut(s) 1178
AfaI GTAC 1 cut(s) 625
AfeI AGCGCT 1 cut(s) 436
AfiI CCNNNNNNNGG 4 cut(s) 157, 328, 721, 1444
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 385, 1437
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 1485, 1517
AluBI AGCT 5 cut(s) 839, 860, 983, 1037, 1603
AluI AGCT 5 cut(s) 839, 860, 983, 1037, 1603
Alw21I GWGCWC 2 cut(s) 1324, 1484
Alw26I GTCTC 2 cut(s) 1110, 1546
AlwI GGATC 4 cut(s) 98, 223, 761, 774
AlwNI CAGNNNCTG 1 cut(s) 626
Aor13HI TCCGGA 1 cut(s) 660
Aor51HI AGCGCT 1 cut(s) 436
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 5 cut(s) 398, 497, 839, 1109, 1608
ApoI RAATTY 3 cut(s) 473, 993, 1347
Asp700I GAANNNNTTC 2 cut(s) 1433, 1557
AspA2I CCTAGG 1 cut(s) 650
AspLEI GCGC 1 cut(s) 437
AsuHPI GGTGA 4 cut(s) 425, 548, 1190, 1333
AvrII CCTAGG 1 cut(s) 650
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 1595
BauI CACGAG 1 cut(s) 927
BbrPI CACGTG 1 cut(s) 1319
BbsI GAAGAC 2 cut(s) 36, 917
Bbv12I GWGCWC 2 cut(s) 1324, 1484
BbvCI CCTCAGC 1 cut(s) 1038
BbvI GCAGC 4 cut(s) 385, 509, 826, 1096
BccI CCATC 2 cut(s) 130, 724
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciT130I CCWGG 2 cut(s) 387, 1439
BciVI GTATCC 2 cut(s) 140, 562
BcoDI GTCTC 2 cut(s) 1110, 1546
BfaI CTAG 5 cut(s) 171, 651, 986, 1175, 1293
BfmI CTRYAG 2 cut(s) 834, 1545
BfoI RGCGCY 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 611
BfuI GTATCC 2 cut(s) 140, 562
BisI GCNGC 6 cut(s) 399, 498, 691, 840, 1110, 1609
BlnI CCTAGG 1 cut(s) 650
BlsI GCNGC 6 cut(s) 400, 499, 692, 841, 1111, 1610
Bme1390I CCNGG 2 cut(s) 387, 1439
BmiI GGNNCC 4 cut(s) 768, 1198, 1383, 1597
BmrFI CCNGG 2 cut(s) 387, 1439
BmrI ACTGGG 2 cut(s) 317, 519
BmsI GCATC 2 cut(s) 539, 636
BmuI ACTGGG 2 cut(s) 317, 519
BpiI GAAGAC 2 cut(s) 36, 917
BplI GAGNNNNNCTC 2 cut(s) 1526, 1558
BpmI CTGGAG 2 cut(s) 408, 585
Bpu10I CCTNAGC 2 cut(s) 522, 1038
BsaAI YACGTR 1 cut(s) 1319
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 650, 1123, 1438
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 328, 721, 1444
Bse1I ACTGG 8 cut(s) 107, 279, 323, 405, 514, 602, 770, 1265
Bse3DI GCAATG 3 cut(s) 210, 370, 700
Bse8I GATNNNNATC 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 660
BseBI CCWGG 2 cut(s) 387, 1439
BseDI CCNNGG 3 cut(s) 650, 1123, 1438
BseGI GGATG 3 cut(s) 427, 1511, 1537
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 4 cut(s) 157, 328, 721, 1444
BseMI GCAATG 3 cut(s) 210, 370, 700
BseMII CTCAG 5 cut(s) 206, 711, 1029, 1127, 1406
BseNI ACTGG 8 cut(s) 107, 279, 323, 405, 514, 602, 770, 1265
BseRI GAGGAG 2 cut(s) 737, 1104
BseXI GCAGC 4 cut(s) 385, 509, 826, 1096
BseYI CCCAGC 2 cut(s) 953, 1603
BsgI GTGCAG 2 cut(s) 500, 891
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 1595
BsiHKAI GWGCWC 2 cut(s) 1324, 1484
BsiSI CCGG 2 cut(s) 395, 661
BslFI GGGAC 2 cut(s) 529, 1239
BslI CCNNNNNNNGG 4 cut(s) 157, 328, 721, 1444
BsmAI GTCTC 2 cut(s) 1110, 1546
BsmBI CGTCTC 1 cut(s) 1110
BsmFI GGGAC 2 cut(s) 529, 1239
BsmI GAATGC 2 cut(s) 490, 1255
BsnI GGCC 1 cut(s) 690
Bsp1286I GDGCHC 2 cut(s) 1324, 1484
Bsp13I TCCGGA 1 cut(s) 660
Bsp143I GATC 5 cut(s) 103, 215, 766, 964, 1418
BspACI CCGC 3 cut(s) 411, 691, 1567
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 5 cut(s) 205, 712, 1030, 1128, 1407
BspEI TCCGGA 1 cut(s) 660
BspLI GGNNCC 4 cut(s) 768, 1198, 1383, 1597
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 4 cut(s) 98, 223, 761, 774
BspT107I GGYRCC 1 cut(s) 1595
BsrDI GCAATG 3 cut(s) 210, 370, 700
BsrI ACTGG 8 cut(s) 107, 279, 323, 405, 514, 602, 770, 1265
BssECI CCNNGG 3 cut(s) 650, 1123, 1438
BssMI GATC 5 cut(s) 103, 215, 766, 964, 1418
BssNI GRCGYC 1 cut(s) 1119
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 650, 1123
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 387, 1439
Bst4CI ACNGT 4 cut(s) 168, 628, 1075, 1460
BstACI GRCGYC 1 cut(s) 1119
BstAPI GCANNNNNTGC 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 1319
BstDEI CTNAG 8 cut(s) 156, 192, 522, 584, 720, 1038, 1136, 1415
BstEII GGTNACC 1 cut(s) 1339
BstENI CCTNNNNNAGG 1 cut(s) 1442
BstF5I GGATG 3 cut(s) 427, 1511, 1537
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 5 cut(s) 106, 218, 769, 967, 1421
BstMAI GTCTC 2 cut(s) 1110, 1546
BstMBI GATC 5 cut(s) 103, 215, 766, 964, 1418
BstMWI GCNNNNNNNGC 5 cut(s) 494, 527, 830, 839, 1109
BstNI CCWGG 2 cut(s) 387, 1439
BstNSI RCATGY 2 cut(s) 1047, 1414
BstPI GGTNACC 1 cut(s) 1339
BstSCI CCNGG 2 cut(s) 385, 1437
BstSFI CTRYAG 2 cut(s) 834, 1545
BstV1I GCAGC 4 cut(s) 385, 509, 826, 1096
BstV2I GAAGAC 2 cut(s) 36, 917
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuI GTATCC 2 cut(s) 140, 562
BsuRI GGCC 1 cut(s) 690
BtsCI GGATG 3 cut(s) 427, 1511, 1537
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 412, 495, 777, 1272
BveI ACCTGC 1 cut(s) 611
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 437
CseI GACGC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 624
CviAII CATG 5 cut(s) 1044, 1150, 1336, 1411, 1592
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 8 cut(s) 156, 192, 522, 584, 720, 1038, 1136, 1415
DpnI GATC 5 cut(s) 105, 217, 768, 966, 1420
DpnII GATC 5 cut(s) 103, 215, 766, 964, 1418
DraIII CACNNNGTG 1 cut(s) 1178
Eco130I CCWWGG 2 cut(s) 650, 1123
Eco32I GATATC 1 cut(s) 1392
Eco47III AGCGCT 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 1319
Eco91I GGTNACC 1 cut(s) 1339
EcoNI CCTNNNNNAGG 1 cut(s) 1442
EcoO65I GGTNACC 1 cut(s) 1339
EcoRI GAATTC 2 cut(s) 473, 1347
EcoRII CCWGG 2 cut(s) 385, 1437
EcoRV GATATC 1 cut(s) 1392
EcoT14I CCWWGG 2 cut(s) 650, 1123
ErhI CCWWGG 2 cut(s) 650, 1123
Esp3I CGTCTC 1 cut(s) 1110
FaeI CATG 5 cut(s) 1047, 1153, 1339, 1414, 1595
FalI AAGNNNNNCTT 2 cut(s) 1545, 1577
FaqI GGGAC 2 cut(s) 529, 1239
FatI CATG 5 cut(s) 1043, 1149, 1335, 1410, 1591
FauNDI CATATG 3 cut(s) 550, 736, 1521
Fnu4HI GCNGC 6 cut(s) 399, 498, 691, 840, 1110, 1609
FokI GGATG 3 cut(s) 434, 1518, 1544
Fsp4HI GCNGC 6 cut(s) 399, 498, 691, 840, 1110, 1609
FspBI CTAG 5 cut(s) 171, 651, 986, 1175, 1293
GlaI GCGC 1 cut(s) 436
GluI GCNGC 6 cut(s) 399, 498, 691, 840, 1110, 1609
GsaI CCCAGC 2 cut(s) 957, 1607
GsuI CTGGAG 2 cut(s) 408, 585
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 1 cut(s) 690
HapII CCGG 2 cut(s) 395, 661
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 5 cut(s) 1047, 1153, 1339, 1414, 1595
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HinfI GANTC 2 cut(s) 139, 1498
HpaII CCGG 2 cut(s) 395, 661
HphI GGTGA 4 cut(s) 425, 548, 1190, 1333
Hpy166II GTNNAC 5 cut(s) 94, 284, 493, 924, 1309
Hpy188I TCNGA 1 cut(s) 721
Hpy188III TCNNGA 7 cut(s) 213, 329, 661, 962, 968, 986, 1576
Hpy8I GTNNAC 5 cut(s) 94, 284, 493, 924, 1309
HpyAV CCTTC 2 cut(s) 1199, 1423
HpyCH4III ACNGT 4 cut(s) 168, 628, 1075, 1460
HpyCH4IV ACGT 2 cut(s) 1119, 1318
HpyF10VI GCNNNNNNNGC 5 cut(s) 494, 527, 830, 839, 1109
HpyF3I CTNAG 8 cut(s) 156, 192, 522, 584, 720, 1038, 1136, 1415
HpySE526I ACGT 2 cut(s) 1119, 1318
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 5 cut(s) 1047, 1153, 1339, 1414, 1595
HspAI GCGC 1 cut(s) 435
Kpn2I TCCGGA 1 cut(s) 660
Kzo9I GATC 5 cut(s) 103, 215, 766, 964, 1418
LmnI GCTCC 4 cut(s) 200, 310, 604, 724
Lsp1109I GCAGC 4 cut(s) 385, 509, 826, 1096
LweI GCATC 2 cut(s) 539, 636
MaeI CTAG 5 cut(s) 171, 651, 986, 1175, 1293
MaeII ACGT 2 cut(s) 1119, 1318
MaeIII GTNAC 5 cut(s) 30, 236, 1314, 1339, 1508
MalI GATC 5 cut(s) 105, 217, 768, 966, 1420
MboI GATC 5 cut(s) 103, 215, 766, 964, 1418
MboII GAAGA 4 cut(s) 36, 922, 1562, 1565
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 2 cut(s) 1324, 1484
MluCI AATT 7 cut(s) 473, 807, 993, 1154, 1279, 1347, 1493
MlyI GAGTC 2 cut(s) 148, 1492
MmeI TCCRAC 4 cut(s) 72, 546, 1057, 1353
MnlI CCTC 9 cut(s) 6, 657, 715, 757, 966, 1033, 1073, 1082, 1523
MroI TCCGGA 1 cut(s) 660
MroXI GAANNNNTTC 2 cut(s) 1433, 1557
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 675
MspI CCGG 2 cut(s) 395, 661
MspR9I CCNGG 2 cut(s) 387, 1439
Mva1269I GAATGC 2 cut(s) 490, 1255
MvaI CCWGG 2 cut(s) 387, 1439
MwoI GCNNNNNNNGC 5 cut(s) 494, 527, 830, 839, 1109
NdeI CATATG 3 cut(s) 550, 736, 1521
NdeII GATC 5 cut(s) 103, 215, 766, 964, 1418
NlaIII CATG 5 cut(s) 1047, 1153, 1339, 1414, 1595
NlaIV GGNNCC 4 cut(s) 768, 1198, 1383, 1597
NmeAIII GCCGAG 1 cut(s) 1279
NmuCI GTSAC 3 cut(s) 30, 1314, 1339
NspI RCATGY 2 cut(s) 1047, 1414
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 2 cut(s) 490, 1255
PdmI GAANNNNTTC 2 cut(s) 1433, 1557
PkrI GCNGC 6 cut(s) 400, 499, 692, 841, 1111, 1610
PleI GAGTC 2 cut(s) 147, 1492
PmaCI CACGTG 1 cut(s) 1319
PmlI CACGTG 1 cut(s) 1319
PpsI GAGTC 2 cut(s) 147, 1492
Ppu21I YACGTR 1 cut(s) 1319
Psp6I CCWGG 2 cut(s) 385, 1437
PspCI CACGTG 1 cut(s) 1319
PspEI GGTNACC 1 cut(s) 1339
PspFI CCCAGC 2 cut(s) 953, 1603
PspGI CCWGG 2 cut(s) 385, 1437
PspN4I GGNNCC 4 cut(s) 768, 1198, 1383, 1597
PsrI GAACNNNNNNTAC 2 cut(s) 309, 341
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 6 cut(s) 399, 498, 691, 840, 1110, 1609
Sau3AI GATC 5 cut(s) 103, 215, 766, 964, 1418
SchI GAGTC 2 cut(s) 148, 1492
ScrFI CCNGG 2 cut(s) 387, 1439
SduI GDGCHC 2 cut(s) 1324, 1484
SfaNI GCATC 2 cut(s) 539, 636
SfcI CTRYAG 2 cut(s) 834, 1545
SmiMI CAYNNNNRTG 1 cut(s) 675
Sse9I AATT 7 cut(s) 473, 807, 993, 1154, 1279, 1347, 1493
SsiI CCGC 3 cut(s) 411, 691, 1567
SspMI CTAG 5 cut(s) 171, 651, 986, 1175, 1293
StyD4I CCNGG 2 cut(s) 385, 1437
StyI CCWWGG 2 cut(s) 650, 1123
TaaI ACNGT 4 cut(s) 168, 628, 1075, 1460
TaiI ACGT 2 cut(s) 1122, 1321
TaqI TCGA 2 cut(s) 269, 967
TasI AATT 7 cut(s) 473, 807, 993, 1154, 1279, 1347, 1493
TauI GCSGC 1 cut(s) 693
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 4 cut(s) 412, 495, 777, 1272
TseFI GTSAC 3 cut(s) 30, 1314, 1339
TseI GCWGC 5 cut(s) 398, 497, 839, 1109, 1608
Tsp45I GTSAC 3 cut(s) 30, 1314, 1339
TspDTI ATGAA 4 cut(s) 255, 330, 873, 987
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 4 cut(s) 412, 495, 777, 1272
XagI CCTNNNNNAGG 1 cut(s) 1442
XapI RAATTY 3 cut(s) 473, 993, 1347
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 2 cut(s) 1047, 1414
XmaJI CCTAGG 1 cut(s) 650
XmnI GAANNNNTTC 2 cut(s) 1433, 1557
XspI CTAG 5 cut(s) 171, 651, 986, 1175, 1293
ZraI GACGTC 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.