pycom07g13030

Mechanosensitive ion channel protein 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
14545894 .. 14548883
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13030.1

Sequence Viewer

Length: 1638 bp
ATGGCTGGAGTTAGGCTTTCCATGTTGAAATCACTTCGCAATTCTACCCCTTGCTCTCTGAACTCGCAGTCGTTTCAGTCGTATACTTCTTATTGGAAAATTGTGAACTACACTGATCCGGGTCATATAAGACCAGCCTATGCTTTTGTAAATCGGAGTTACCATTCGAAGGAAACACAATCTCATAACAACTTTGCAAAGGCTCATTCTAGAGCATTGGGTTCTGAATCATTTATCAATATCCAATCTTACAGTACGAAACCCATTTCAGCATTTTCATCTACATTGTCGAGTACACAGATTAGGGGTGCTACTCCACTGGCTTTGATAAACCCAATTTTTAGTAGCCGTTCATACTCATCATTTTTCGGTAGCAATGCTGATAAAACTGGGGAACCAGGACTAGGAGTTCCGGCTGCTTCTGGTGGAAGTGAAGTGGATGTTGGTAATAGTGGCATTGTTGGAAGTGACTGGGTTGGCAAGTTTAAGGATGCATGGCAGAGTGCATTGGATGCGGCAACTTTTACCGGACAGAAGGCTAAAGAAACCTCCACTGAACTGTCTCCTTATATTCAGCAGTTGCTGGATTCAAATCCACATCTTAGAAATGTGGTTGTTCCTGTTGGTTGTACTTTGGCAGGTACTATATTTGCTTGGTTTGTGATGCCGAGGCTTTTCAGGAGATTTCACAATTACGGAAATCAAGGGCGTGCTGCTTTGCTATCTGCAAGTCCATCTGAAGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGACCCAGTGCGATATCTAGTTACGTTCATGGCATTTTCTCAAATTGGTGTGATGGTAGCACCAACCACTATAGCTGCACAGTATCTTGCACCAGCATGGAGAGGTGCAGTTATCCTTTCATTTGTGTGGTTTCTACATCGGTGGAAGACAAACGTGTTCACTCGTGCATTAGAAACTCAAACTTTGCCTGGTCTTGATCGGGACAAGTTGCTAGCTATGGACAACATTTCATCCGTTGGTCTTTTTGTGATTGGGATAATGGCTTTAGCTGAGGCATGTGGGGTGGCTGTACAATCAATTTTGACAGTTGGTGGCATAGGAGGAGTTGCTACTGCATTTGCTGCCAGAGACATCCTTGGAAATGTTCTGAGTGGGTTGTCTATGCAGTTTTCAAAGCCGTTTTCACTTGGAGATACTATAAAAGCTGGATCTATTGAAGGTCAAGTGGTGGAAATGGGACTTACTACTACTTGTTTACTGAATGCCGAGAAGTTCCCTGTCATAGTTCCTAATTCACTCTTTTCTAGTCAGGTAATTGTGAACAAGTCACGTGCGCAATGGCGTGCCATTGTCACCAAAATTCCCCTGCAAATTAATGATTTGGATAAGATTCCCCAGATATCAACTGATATAAAGAGCATGCTAAGGTCACACTCGAAGGTGTTCTTGGGAAAGGAGGCCCCTTACTGTTTCCTGTCTCGTTTAGAAAGTTCATTTGCTGAATTGACTCTCGGATGTAACCTCAAACATATGAGCAAAGGAGAGCTATACTCTACTGAAGAAGAGATTATCCTGCGCTCGGCTCAGATAATTAAGGAGCATGGTGCTAAGCTGGGCAGCACCTACCAGATATGA

Protein Analysis

546

Amino Acids

59.33

Weight (kDa)

9.18

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MS_channel_2nd PF00924 378 - 445 2.8e-16 Mechanosensitive ion channel, beta-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1338
Acc36I ACCTGC 1 cut(s) 629
AccI GTMKAC 1 cut(s) 83
AciI CCGC 1 cut(s) 515
AclWI GGATC 2 cut(s) 110, 1219
AcsI RAATTY 1 cut(s) 1362
AcuI CTGAAG 2 cut(s) 759, 1581
AcvI CACGTG 1 cut(s) 1334
AfaI GTAC 5 cut(s) 256, 295, 631, 643, 1074
AfiI CCNNNNNNNGG 3 cut(s) 169, 404, 1582
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 4 cut(s) 28, 591, 1176, 1220
AjnI CCWGG 2 cut(s) 397, 970
AjuI GAANNNNNNNTTGG 4 cut(s) 426, 458, 1433, 1465
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 6 cut(s) 857, 998, 1052, 1208, 1549, 1615
AluI AGCT 6 cut(s) 857, 998, 1052, 1208, 1549, 1615
Alw26I GTCTC 3 cut(s) 567, 1125, 1485
AlwI GGATC 2 cut(s) 110, 1219
AlwNI CAGNNNCTG 1 cut(s) 583
AoxI GGCC 1 cut(s) 1461
ApeKI GCWGC 5 cut(s) 416, 713, 857, 1124, 1620
ApoI RAATTY 1 cut(s) 1362
AseI ATTAAT 1 cut(s) 1377
Asp700I GAANNNNTTC 1 cut(s) 1445
AspLEI GCGC 2 cut(s) 1339, 1581
AspS9I GGNCC 2 cut(s) 784, 1462
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 1348
AsuII TTCGAA 1 cut(s) 167
AsuNHI GCTAGC 1 cut(s) 994
AvaII GGWCC 1 cut(s) 784
BauI CACGAG 1 cut(s) 945
BbrPI CACGTG 1 cut(s) 1334
BbsI GAAGAC 1 cut(s) 935
BbvCI CCTCAGC 1 cut(s) 1053
BbvI GCAGC 5 cut(s) 403, 700, 844, 1111, 1632
BccI CCATC 2 cut(s) 742, 829
BceAI ACGGC 2 cut(s) 333, 1165
BciT130I CCWGG 2 cut(s) 399, 972
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 567, 1125, 1485
BfaI CTAG 5 cut(s) 210, 404, 800, 995, 1308
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 6 cut(s) 417, 516, 714, 858, 1125, 1621
BlpI GCTNAGC 1 cut(s) 1611
BlsI GCNGC 6 cut(s) 418, 517, 715, 859, 1126, 1622
Bme1390I CCNGG 3 cut(s) 120, 399, 972
Bme18I GGWCC 1 cut(s) 784
BmgT120I GGNCC 2 cut(s) 784, 1462
BmiI GGNNCC 3 cut(s) 396, 786, 1464
BmrFI CCNGG 3 cut(s) 120, 399, 972
BmrI ACTGGG 3 cut(s) 399, 481, 782
BmsI GCATC 3 cut(s) 481, 502, 654
BmtI GCTAGC 1 cut(s) 998
BmuI ACTGGG 3 cut(s) 399, 481, 782
BpiI GAAGAC 1 cut(s) 935
BplI GAGNNNNNCTC 2 cut(s) 1538, 1570
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 1053, 1427
Bpu1102I GCTNAGC 1 cut(s) 1611
Bpu14I TTCGAA 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 1334
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 668, 1138
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 404, 1582
Bse1I ACTGG 4 cut(s) 324, 394, 476, 788
Bse3DI GCAATG 2 cut(s) 382, 1346
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 2 cut(s) 399, 972
BseDI CCNNGG 2 cut(s) 668, 1138
BseGI GGATG 6 cut(s) 445, 496, 517, 1013, 1134, 1523
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 169, 404, 1582
BseMI GCAATG 2 cut(s) 382, 1346
BseMII CTCAG 3 cut(s) 1044, 1142, 1601
BseNI ACTGG 4 cut(s) 324, 394, 476, 788
BseRI GAGGAG 1 cut(s) 1119
BseXI GCAGC 5 cut(s) 403, 700, 844, 1111, 1632
BseYI CCCAGC 1 cut(s) 1615
BsgI GTGCAG 2 cut(s) 843, 909
BshFI GGCC 1 cut(s) 1463
BsiSI CCGG 3 cut(s) 119, 413, 528
BslFI GGGAC 2 cut(s) 998, 1254
BslI CCNNNNNNNGG 3 cut(s) 169, 404, 1582
BsmAI GTCTC 3 cut(s) 567, 1125, 1485
BsmFI GGGAC 2 cut(s) 998, 1254
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 1 cut(s) 1463
Bsp119I TTCGAA 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 1072
Bsp143I GATC 3 cut(s) 115, 979, 1211
Bsp1720I GCTNAGC 1 cut(s) 1611
BspACI CCGC 1 cut(s) 515
BspANI GGCC 1 cut(s) 1463
BspCNI CTCAG 3 cut(s) 1045, 1143, 1600
BspLI GGNNCC 3 cut(s) 396, 786, 1464
BspMI ACCTGC 1 cut(s) 629
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 2 cut(s) 110, 1219
BspQI GCTCTTC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 382, 1346
BsrGI TGTACA 1 cut(s) 1072
BsrI ACTGG 4 cut(s) 324, 394, 476, 788
BssECI CCNNGG 2 cut(s) 668, 1138
BssMI GATC 3 cut(s) 115, 979, 1211
BssNAI GTATAC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 1138
Bst1107I GTATAC 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 945
Bst2UI CCWGG 2 cut(s) 399, 972
Bst4CI ACNGT 5 cut(s) 254, 561, 864, 1090, 1472
Bst6I CTCTTC 2 cut(s) 735, 1560
BstAPI GCANNNNNTGC 2 cut(s) 512, 1124
BstAUI TGTACA 1 cut(s) 1072
BstBAI YACGTR 1 cut(s) 1334
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 4 cut(s) 711, 996, 1347, 1424
BstDEI CTNAG 6 cut(s) 602, 1053, 1151, 1427, 1587, 1611
BstF5I GGATG 6 cut(s) 445, 496, 517, 1013, 1134, 1523
BstHHI GCGC 2 cut(s) 1339, 1581
BstKTI GATC 3 cut(s) 118, 982, 1214
BstMAI GTCTC 3 cut(s) 567, 1125, 1485
BstMBI GATC 3 cut(s) 115, 979, 1211
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1124
BstNI CCWGG 2 cut(s) 399, 972
BstNSI RCATGY 2 cut(s) 1062, 1426
BstSCI CCNGG 3 cut(s) 118, 397, 970
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 5 cut(s) 403, 700, 844, 1111, 1632
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BstZ17I GTATAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 1463
BtsCI GGATG 6 cut(s) 445, 496, 517, 1013, 1134, 1523
BtsIMutI CAGTG 4 cut(s) 111, 317, 552, 795
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 4 cut(s) 711, 996, 1347, 1424
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 2 cut(s) 1339, 1581
Cfr13I GGNCC 2 cut(s) 784, 1462
Csp6I GTAC 5 cut(s) 255, 294, 630, 642, 1073
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 7 cut(s) 22, 495, 811, 879, 1059, 1423, 1604
CviQI GTAC 5 cut(s) 255, 294, 630, 642, 1073
DdeI CTNAG 6 cut(s) 602, 1053, 1151, 1427, 1587, 1611
DpnI GATC 3 cut(s) 117, 981, 1213
DpnII GATC 3 cut(s) 115, 979, 1211
Eam1104I CTCTTC 2 cut(s) 735, 1560
EarI CTCTTC 2 cut(s) 735, 1560
Eco130I CCWWGG 1 cut(s) 1138
Eco32I GATATC 2 cut(s) 797, 1404
Eco47I GGWCC 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 759, 1581
Eco72I CACGTG 1 cut(s) 1334
EcoO109I RGGNCCY 2 cut(s) 784, 1462
EcoRII CCWGG 2 cut(s) 397, 970
EcoRV GATATC 2 cut(s) 797, 1404
EcoT14I CCWWGG 1 cut(s) 1138
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 1138
FaeI CATG 7 cut(s) 25, 498, 814, 882, 1062, 1426, 1607
FalI AAGNNNNNCTT 2 cut(s) 1433, 1465
FaqI GGGAC 2 cut(s) 998, 1254
FatI CATG 7 cut(s) 21, 494, 810, 878, 1058, 1422, 1603
FauNDI CATATG 2 cut(s) 754, 1533
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 6 cut(s) 417, 516, 714, 858, 1125, 1621
FokI GGATG 6 cut(s) 452, 503, 524, 1000, 1121, 1530
Fsp4HI GCNGC 6 cut(s) 417, 516, 714, 858, 1125, 1621
FspBI CTAG 5 cut(s) 210, 404, 800, 995, 1308
FspI TGCGCA 1 cut(s) 1338
GlaI GCGC 2 cut(s) 1338, 1580
GluI GCNGC 6 cut(s) 417, 516, 714, 858, 1125, 1621
GsaI CCCAGC 1 cut(s) 1619
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 1463
HapII CCGG 3 cut(s) 119, 413, 528
HhaI GCGC 2 cut(s) 1339, 1581
Hin1II CATG 7 cut(s) 25, 498, 814, 882, 1062, 1426, 1607
Hin6I GCGC 2 cut(s) 1337, 1579
HinP1I GCGC 2 cut(s) 1337, 1579
HinfI GANTC 4 cut(s) 227, 587, 1393, 1510
HpaII CCGG 3 cut(s) 119, 413, 528
HphI GGTGA 1 cut(s) 1348
Hpy166II GTNNAC 6 cut(s) 84, 106, 296, 942, 1259, 1324
Hpy188I TCNGA 7 cut(s) 60, 156, 226, 739, 1152, 1517, 1590
Hpy188III TCNNGA 4 cut(s) 210, 679, 977, 983
Hpy8I GTNNAC 6 cut(s) 84, 106, 296, 942, 1259, 1324
HpyAV CCTTC 4 cut(s) 163, 529, 1214, 1435
HpyCH4III ACNGT 5 cut(s) 254, 561, 864, 1090, 1472
HpyCH4IV ACGT 3 cut(s) 806, 936, 1333
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1124
HpyF3I CTNAG 6 cut(s) 602, 1053, 1151, 1427, 1587, 1611
HpySE526I ACGT 3 cut(s) 806, 936, 1333
Hsp92II CATG 7 cut(s) 25, 498, 814, 882, 1062, 1426, 1607
HspAI GCGC 2 cut(s) 1337, 1579
Kzo9I GATC 3 cut(s) 115, 979, 1211
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 1 cut(s) 1600
Lsp1109I GCAGC 5 cut(s) 403, 700, 844, 1111, 1632
LweI GCATC 3 cut(s) 481, 502, 654
MaeI CTAG 5 cut(s) 210, 404, 800, 995, 1308
MaeII ACGT 3 cut(s) 806, 936, 1333
MaeIII GTNAC 7 cut(s) 158, 467, 802, 1329, 1354, 1431, 1520
MalI GATC 3 cut(s) 117, 981, 1213
MboI GATC 3 cut(s) 115, 979, 1211
MboII GAAGA 4 cut(s) 752, 940, 1574, 1577
MflI RGATCY 1 cut(s) 1211
MlyI GAGTC 1 cut(s) 1504
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 8 cut(s) 559, 663, 775, 878, 1048, 1097, 1453, 1535
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 1445
MseI TTAA 3 cut(s) 486, 1377, 1596
MslI CAYNNNNRTG 2 cut(s) 877, 907
MspI CCGG 3 cut(s) 119, 413, 528
MspR9I CCNGG 3 cut(s) 120, 399, 972
Mva1269I GAATGC 1 cut(s) 1270
MvaI CCWGG 2 cut(s) 399, 972
MwoI GCNNNNNNNGC 2 cut(s) 512, 1124
NciI CCSGG 1 cut(s) 120
NdeI CATATG 2 cut(s) 754, 1533
NdeII GATC 3 cut(s) 115, 979, 1211
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 7 cut(s) 25, 498, 814, 882, 1062, 1426, 1607
NlaIV GGNNCC 3 cut(s) 396, 786, 1464
NmeAIII GCCGAG 3 cut(s) 693, 1294, 1562
NmuCI GTSAC 4 cut(s) 467, 1329, 1354, 1431
NsbI TGCGCA 1 cut(s) 1338
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 2 cut(s) 1062, 1426
NspV TTCGAA 1 cut(s) 167
PaeI GCATGC 1 cut(s) 1426
PciSI GCTCTTC 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 1270
PdmI GAANNNNTTC 1 cut(s) 1445
PfeI GAWTC 3 cut(s) 227, 587, 1393
PkrI GCNGC 6 cut(s) 418, 517, 715, 859, 1126, 1622
PleI GAGTC 1 cut(s) 1504
PmaCI CACGTG 1 cut(s) 1334
PmlI CACGTG 1 cut(s) 1334
PpsI GAGTC 1 cut(s) 1504
Ppu21I YACGTR 1 cut(s) 1334
PpuMI RGGWCCY 1 cut(s) 784
PshBI ATTAAT 1 cut(s) 1377
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 397, 970
PspCI CACGTG 1 cut(s) 1334
PspFI CCCAGC 1 cut(s) 1615
PspGI CCWGG 2 cut(s) 397, 970
PspN4I GGNNCC 3 cut(s) 396, 786, 1464
PspPI GGNCC 2 cut(s) 784, 1462
PspPPI RGGWCCY 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 1211
RsaI GTAC 5 cut(s) 256, 295, 631, 643, 1074
RsaNI GTAC 5 cut(s) 255, 294, 630, 642, 1073
RseI CAYNNNNRTG 2 cut(s) 877, 907
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 3 cut(s) 486, 1377, 1596
SatI GCNGC 6 cut(s) 417, 516, 714, 858, 1125, 1621
Sau3AI GATC 3 cut(s) 115, 979, 1211
Sau96I GGNCC 2 cut(s) 784, 1462
SchI GAGTC 1 cut(s) 1504
ScrFI CCNGG 3 cut(s) 120, 399, 972
SfaNI GCATC 3 cut(s) 481, 502, 654
SfcI CTRYAG 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 877, 907
SphI GCATGC 1 cut(s) 1426
SsiI CCGC 1 cut(s) 515
SspMI CTAG 5 cut(s) 210, 404, 800, 995, 1308
StyD4I CCNGG 3 cut(s) 118, 397, 970
StyI CCWWGG 1 cut(s) 1138
TaaI ACNGT 5 cut(s) 254, 561, 864, 1090, 1472
TaiI ACGT 3 cut(s) 809, 939, 1336
TaqI TCGA 3 cut(s) 167, 290, 1439
TatI WGTACW 3 cut(s) 293, 629, 1072
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 3 cut(s) 227, 587, 1393
Tru1I TTAA 3 cut(s) 486, 1377, 1596
Tru9I TTAA 3 cut(s) 486, 1377, 1596
TscAI CASTG 4 cut(s) 118, 324, 559, 795
TseFI GTSAC 4 cut(s) 467, 1329, 1354, 1431
TseI GCWGC 5 cut(s) 416, 713, 857, 1124, 1620
Tsp45I GTSAC 4 cut(s) 467, 1329, 1354, 1431
TspDTI ATGAA 6 cut(s) 267, 342, 799, 891, 1002, 1485
TspGWI ACGGA 2 cut(s) 711, 1006
TspRI CASTG 4 cut(s) 118, 324, 559, 795
VpaK11BI GGWCC 1 cut(s) 784
VspI ATTAAT 1 cut(s) 1377
XapI RAATTY 1 cut(s) 1362
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 2 cut(s) 1062, 1426
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 1445
XspI CTAG 5 cut(s) 210, 404, 800, 995, 1308
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.