Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005685

Physical Location & Seq

Genomic Coordinates Forward (+)

57997864 .. 57998397

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCCTAGGCTTTTCGGGAGGTTTCACAAGTACGCAAGTCTAGGCCGCATCGCTTTACTATCCGGGAGCCTTGAAGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGCGATATCTATTTACTTTTATGGCATTTTCACAGATTGGCACAATGGTTGCACCAACCGCTATAGCTGCTCAATATCTTGCACCGGCTTGGAGAGGTGCAGCTATTATTTCATTTGTTTGGTTTCTATATCGGTGGAAGACAAATGTGTATACTCGTGCATTAGCAACTAAAAGTTTGCCCAGCAGTCTTGATCGGGAGAAGTTGTTAGCTTTAGACAAAATTTCATCTGTTGGTCTTTTTATGATTGGGATAATGGCTCTAGCCGAGGCAAGTGGGGTGGCCGTGCAATCTATTATGACCGTTGGTGGCATAAGAGGAGTTGCTATCGCTTTTGCTGCCGTGGATGTCCTTGGCAACGTGCCGAGTGGTTTATCTATGCAATTTACAAAGCCCTTTTTCACTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

177

Amino Acids

19.41

Weight (kDa)

9.79

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00234 AT4G00290
fragaria_vesca	FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010 FvH4_7g15010
malus_domestica	MD01G1068400.v1.1
prunus_persica	Prupe.2G174600_v2.0.a1 Prupe.2G174600_v2.0.a1
pyrus_communis	pycom07g13030
rosa_chinensis	RchiOBHm_Chr1g0357041
rosa_laevigata	RLG00000028058
rosa_multiflora	Rmu_sc0000166.1_g000040 Rmu_sc0013980.1_g000024
rosa_roxburghii	Rroxscaffold_4G00299100 Rroxscaffold_6G00397860 Rroxscaffold_7G00208020
rosa_rugosa	Rorug01G0253800
rosa_samantha	Rh1AG267500 Rh1BG235300 Rh1BG235400 Rh1CG146800 Rh1CG251500 Rh1DG262700 Rh1DG262800
rosa_wichuraiana	Rw1G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	46, 183
AclWI	GGATC	2 cut(s)	113, 126
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	3 cut(s)	191, 227, 335
AluI	AGCT	3 cut(s)	191, 227, 335
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	2 cut(s)	43, 405
ApeKI	GCWGC	3 cut(s)	191, 224, 461
ApoI	RAATTY	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	3 cut(s)	178, 236, 448
BceAI	ACGGC	2 cut(s)	392, 449
BcnI	CCSGG	1 cut(s)	64
BfaI	CTAG	3 cut(s)	6, 41, 386
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	4 cut(s)	46, 192, 225, 462
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	4 cut(s)	47, 193, 226, 463
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	68, 120
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	5, 390, 465, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	4 cut(s)	5, 390, 465, 475
BseGI	GGATG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	178, 236, 448
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	45, 407
BsiSI	CCGG	2 cut(s)	63, 209
BsnI	GGCC	2 cut(s)	45, 407
Bsp143I	GATC	2 cut(s)	118, 316
BspACI	CCGC	2 cut(s)	46, 183
BspANI	GGCC	2 cut(s)	45, 407
BspLI	GGNNCC	2 cut(s)	68, 120
BspPI	GGATC	2 cut(s)	113, 126
BspQI	GCTCTTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	5, 390, 465, 475
BssMI	GATC	2 cut(s)	118, 316
BssNAI	GTATAC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	5, 475
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	2 cut(s)	121, 319
BstMBI	GATC	2 cut(s)	118, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 191, 461
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	178, 236, 448
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	45, 407
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	120, 318
DpnII	GATC	2 cut(s)	118, 316
DraIII	CACNNNGTG	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	5, 475
Eco32I	GATATC	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	5, 475
ErhI	CCWWGG	2 cut(s)	5, 475
FauNDI	CATATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	4 cut(s)	46, 192, 225, 462
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	46, 192, 225, 462
FspBI	CTAG	3 cut(s)	6, 41, 386
GluI	GCNGC	4 cut(s)	46, 192, 225, 462
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	45, 407
HapII	CCGG	2 cut(s)	63, 209
HpaII	CCGG	2 cut(s)	63, 209
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	16, 314, 320
Hpy8I	GTNNAC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	176, 206, 224, 284, 412, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 191, 461
HpySE526I	ACGT	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	118, 316
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	76, 135, 222, 319
Lsp1109I	GCAGC	3 cut(s)	178, 236, 448
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	3 cut(s)	6, 41, 386
MaeII	ACGT	1 cut(s)	483
MalI	GATC	2 cut(s)	120, 318
MboI	GATC	2 cut(s)	118, 316
MboII	GAAGA	2 cut(s)	86, 274
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	345, 506
MnlI	CCTC	5 cut(s)	12, 109, 212, 385, 434
MspI	CCGG	2 cut(s)	63, 209
MspR9I	CCNGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	182, 191, 461
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	2 cut(s)	118, 316
NlaIV	GGNNCC	2 cut(s)	68, 120
NmeAIII	GCCGAG	2 cut(s)	415, 513
PciSI	GCTCTTC	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	47, 193, 226, 463
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	68, 120
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	4 cut(s)	46, 192, 225, 462
Sau3AI	GATC	2 cut(s)	118, 316
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	6 cut(s)	23, 193, 223, 229, 337, 486
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	345, 506
SsiI	CCGC	2 cut(s)	46, 183
SspMI	CTAG	3 cut(s)	6, 41, 386
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	5, 475
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	486
TasI	AATT	2 cut(s)	345, 506
TauI	GCSGC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	3 cut(s)	191, 224, 461
TspDTI	ATGAA	2 cut(s)	225, 339
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	6, 41, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.