Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

1319603 .. 1321608

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATCGTACTTTCTGTTGGTTCCGCTTCTTCATCTCCGATCGTCGTCGTCTTTTCCGTCGCGCTTCTTCTGTTCTACTTCTCTGAAACTTCTCTAGGAGCTCCTTGTCCCATCAATGGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAGGATAACTATGGAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCATGGAATGAAAGAGGTTGAAATATGGCTTCAGACATTTGCTCCAGGTTCAGAGACACCAATTCACAGGCACTCCTGTGAAGAGGTTTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTCGCTGAAACACATGGAAATTTCCCTGGGAAACCAATCGAATTTCCAATCTTTGCCAACAGTACAATTCATATTCCGATCAATGATGCTCATCAGGTCAAAAACACCGGTCATGAGGACCTGCAGGTGTTGGTTATCATATCTCGGCCGCCTATTAAAATCTTCATCTACGAAGACTGGTTTATGCCACACACTGCTGCAAGGCTGAAGTTCCCTTACTATTGGGATGAGCAATGCATTCAAGAATCACAAAAAGACGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

198

Amino Acids

22.04

Weight (kDa)

5.51

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	34 - 198	2.1e-104	Auxin binding protein
Cupin_2	PF07883	79 - 156	6.5e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	2 cut(s)	445, 459
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	24, 479
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	349, 371
AcuI	CTGAAG	2 cut(s)	224, 557
AfaI	GTAC	3 cut(s)	9, 322, 394
AfiI	CCNNNNNNNGG	2 cut(s)	116, 154
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	230, 572
AjnI	CCWGG	3 cut(s)	172, 253, 355
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	101, 592
AluI	AGCT	2 cut(s)	101, 592
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	349, 371
AsiGI	ACCGGT	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
BbsI	GAAGAC	2 cut(s)	175, 510
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	174, 255, 357
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	452
BfuAI	ACCTGC	2 cut(s)	445, 459
BisI	GCNGC	2 cut(s)	479, 528
BlsI	GCNGC	2 cut(s)	480, 529
Bme1390I	CCNGG	3 cut(s)	174, 255, 357
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	22, 202
BmrFI	CCNGG	3 cut(s)	174, 255, 357
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	175, 510
BpmI	CTGGAG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	355, 356
BsaWI	WCCGGW	1 cut(s)	437
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 154
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	512
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	174, 255, 357
BseDI	CCNNGG	2 cut(s)	355, 356
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	116, 154
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	512
BseX3I	CGGCCG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	2 cut(s)	42, 479
BshFI	GGCC	1 cut(s)	478
BshTI	ACCGGT	1 cut(s)	437
BsiEI	CGRYCG	2 cut(s)	42, 479
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	116, 154
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	3, 39, 408
BspACI	CCGC	2 cut(s)	24, 479
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	22, 202
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	2 cut(s)	445, 459
BsrDI	GCAATG	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	355, 356
BssMI	GATC	3 cut(s)	3, 39, 408
Bst2UI	CCWGG	3 cut(s)	174, 255, 357
Bst4CI	ACNGT	2 cut(s)	193, 392
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	122, 199
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	6, 42, 411
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	3, 39, 408
BstMCI	CGRYCG	2 cut(s)	42, 479
BstNI	CCWGG	3 cut(s)	174, 255, 357
BstSCI	CCNGG	3 cut(s)	172, 253, 355
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	2 cut(s)	175, 510
BstZI	CGGCCG	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	322, 522
BtsIMutI	CAGTG	2 cut(s)	322, 522
BveI	ACCTGC	2 cut(s)	445, 459
Cac8I	GCNNGC	2 cut(s)	122, 199
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	448
CsiI	ACCWGGT	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	8, 321, 393
CspAI	ACCGGT	1 cut(s)	437
CviAII	CATG	4 cut(s)	187, 212, 344, 443
CviJI	RGCY	7 cut(s)	101, 120, 201, 238, 478, 535, 592
CviKI_1	RGCY	7 cut(s)	101, 120, 201, 238, 478, 535, 592
CviQI	GTAC	3 cut(s)	8, 321, 393
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	5, 41, 410
DpnII	GATC	3 cut(s)	3, 39, 408
EaeI	YGGCCR	1 cut(s)	476
EagI	CGGCCG	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	448
Eco52I	CGGCCG	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	224, 557
Eco81I	CCTNAGG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	172, 253, 355
EcoT22I	ATGCAT	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	4 cut(s)	190, 215, 347, 446
FaiI	YATR	9 cut(s)	165, 188, 213, 235, 345, 402, 444, 470, 515
FalI	AAGNNNNNCTT	1 cut(s)	576
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	4 cut(s)	186, 211, 343, 442
Fnu4HI	GCNGC	2 cut(s)	479, 528
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	479, 528
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	479, 528
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	190, 215, 347, 446
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	1 cut(s)	438
Hpy188I	TCNGA	5 cut(s)	39, 85, 243, 262, 408
Hpy188III	TCNNGA	4 cut(s)	130, 155, 443, 572
Hpy99I	CGWCG	3 cut(s)	47, 50, 62
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	193, 392
HpyCH4V	TGCA	4 cut(s)	211, 454, 530, 567
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	190, 215, 347, 446
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	3, 39, 408
LmnI	GCTCC	4 cut(s)	98, 106, 206, 256
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	5, 41, 410
MboI	GATC	3 cut(s)	3, 39, 408
MboII	GAAGA	6 cut(s)	21, 59, 180, 302, 484, 515
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	4 cut(s)	270, 349, 371, 396
MnlI	CCTC	5 cut(s)	126, 162, 217, 286, 439
Mph1103I	ATGCAT	1 cut(s)	569
MseI	TTAA	2 cut(s)	486, 595
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	3 cut(s)	174, 255, 357
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	3 cut(s)	174, 255, 357
MvnI	CGCG	1 cut(s)	62
NdeII	GATC	3 cut(s)	3, 39, 408
NlaIII	CATG	4 cut(s)	190, 215, 347, 446
NlaIV	GGNNCC	2 cut(s)	22, 202
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	569
OliI	CACNNNNGTG	1 cut(s)	285
PagI	TCATGA	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	480, 529
Ple19I	CGATCG	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	172, 253, 355
PspGI	CCWGG	3 cut(s)	172, 253, 355
PspN4I	GGNNCC	2 cut(s)	22, 202
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	174
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	3 cut(s)	9, 322, 394
RsaNI	GTAC	3 cut(s)	8, 321, 393
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	486, 595
SatI	GCNGC	2 cut(s)	479, 528
Sau3AI	GATC	3 cut(s)	3, 39, 408
Sau96I	GGNCC	1 cut(s)	448
SbfI	CCTGCAGG	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	174, 255, 357
SdaI	CCTGCAGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	103
SexAI	ACCWGGT	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse8387I	CCTGCAGG	1 cut(s)	456
Sse9I	AATT	4 cut(s)	270, 349, 371, 396
SsiI	CCGC	2 cut(s)	24, 479
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	3 cut(s)	172, 253, 355
TaaI	ACNGT	2 cut(s)	193, 392
TaqI	TCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	270, 349, 371, 396
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	486, 595
Tru9I	TTAA	2 cut(s)	486, 595
TscAI	CASTG	2 cut(s)	322, 529
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	21, 233, 389, 484
TspGWI	ACGGA	2 cut(s)	46, 193
TspRI	CASTG	2 cut(s)	322, 529
Tth111I	GACNNNGTC	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	349, 371
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.